RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 FAM49BQ9NUQ9 324 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 ZNF180Q9UJW8 692 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 USP3Q9Y6I4 520 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 H0YHG0 523 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 H7C0C1 242 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 CTGFP29279 349 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 FOXN2P32314 431 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 SKIV2L2P42285 1042 aaKnown RBP12.69□□□□□ -0.38
PTPRF-212ENST00000477970 ATP5OP48047 213 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 BASP1P80723 227 aaKnown RBP12.69□□□□□ -0.38
PTPRF-212ENST00000477970 PPARDQ03181 441 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 SCUBE3Q8IX30 993 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 SMG8Q8ND04 991 aaKnown RBP12.69□□□□□ -0.38
PTPRF-212ENST00000477970 TMEM40Q8WWA1 233 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 DNAJB3Q8WWF6 145 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 SLC44A1Q8WWI5 657 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 QKIQ96PU8 341 aaKnown RBP eCLIP12.69□□□□□ -0.38
PTPRF-212ENST00000477970 KLC2Q9H0B6 622 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 NGRNQ9NPE2 291 aaKnown RBP12.69□□□□□ -0.38
PTPRF-212ENST00000477970 FLRT1Q9NZU1 646 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 PIN4Q9Y237 131 aaKnown RBP12.69□□□□□ -0.38
PTPRF-212ENST00000477970 C17orf102A2RUQ5 167 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 SPTLC1O15269 473 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 TMEM62Q0P6H9 643 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 CDO1Q16878 200 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 SLC45A4Q5BKX6 768 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 ARMC5Q96C12 935 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 C10orf88Q9H8K7 445 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 RXFP1Q9HBX9 757 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 ETNK2Q9NVF9 386 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 MTMR10Q9NXD2 777 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.68□□□□□ -0.38
PTPRF-212ENST00000477970 IPPQ9Y573 584 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 DOCK3Q8IZD9 2030 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 FOXO6A8MYZ6 492 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 GOLGA8MH3BSY2 632 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 C1QAP02745 245 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 ALADP13716 330 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 CYP2F1P24903 491 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 SSTR1P30872 391 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 HNRNPH1P31943 449 aaKnown RBP12.68□□□□□ -0.38
PTPRF-212ENST00000477970 MATKP42679 507 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 MSH2P43246 934 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 AIF1P55008 147 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 ATP11AP98196 1134 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 TAF2Q6P1X5 1199 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 CYS1Q717R9 158 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 BZW1Q7L1Q6 419 aaKnown RBP12.68□□□□□ -0.38
PTPRF-212ENST00000477970 GDAP1Q8TB36 358 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 PPP1R10Q96QC0 940 aaKnown RBP12.68□□□□□ -0.38
PTPRF-212ENST00000477970 SLC40A1Q9NP59 571 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 SRRDQ9UH36 339 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 HES2Q9Y543 173 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 IQANK1A0A1B0GTG1 560 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 GABRDO14764 452 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 GRAP2O75791 330 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 ZBED1O96006 694 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 RPLP2P05387 115 aaKnown RBP12.68□□□□□ -0.38
PTPRF-212ENST00000477970 CA9Q16790 459 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 SLC25A52Q3SY17 297 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 HACE1Q8IYU2 909 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 ADGRF2Q8IZF7 708 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 BANPQ8N9N5 519 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 ZNF398Q8TD17 642 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 SOCS4Q8WXH5 440 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 OLFM3Q96PB7 478 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 DUSP16Q9BY84 665 aa12.68□□□□□ -0.38
PTPRF-212ENST00000477970 KCNN4O15554 427 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 HUS1O60921 280 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 BANF1O75531 89 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 IL1BP01584 269 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 PRKCHP24723 683 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 ELK3P41970 407 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 YWHAZP63104 245 aaKnown RBP12.67□□□□□ -0.38
PTPRF-212ENST00000477970 NKX3-2P78367 333 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 SLC18A2Q05940 514 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 BBS9Q3SYG4 887 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 C1orf228Q6PIY5 440 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 ZC3H18Q86VM9 953 aaKnown RBP12.67□□□□□ -0.38
PTPRF-212ENST00000477970 AP5M1Q9H0R1 490 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 MKS1Q9NXB0 559 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 FZD10Q9ULW2 581 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 AP4E1Q9UPM8 1137 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 TRIM17Q9Y577 477 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 PIK3R2O00459 728 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 TREHO43280 583 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 DGKIO75912 1065 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 CCDC130P13994 396 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 AKAP5P24588 427 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 RBL1P28749 1068 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 RGS2P41220 211 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 LILRA4P59901 499 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 BNIP1Q12981 228 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 GLRA4Q5JXX5 417 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 FBXW10Q5XX13 1052 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 SCYL2Q6P3W7 929 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 SH2D5Q6ZV89 423 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 B3GALNT2Q8NCR0 500 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 MAGEC3Q8TD91 643 aa12.67□□□□□ -0.38
PTPRF-212ENST00000477970 SLC2A13Q96QE2 648 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms