RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 CALB2P22676 271 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 THPOP40225 353 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 CPA2P48052 419 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 APOBEC3GQ9HC16 384 aaKnown RBP15.1■□□□□ 0.01
HDAC6-220ENST00000477528 ADA2Q9NZK5 511 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 THEGQ9P2T0 379 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 ATXN2Q99700 1313 aaKnown RBP15.1■□□□□ 0.01
HDAC6-220ENST00000477528 KPNA6O60684 536 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 CCDC130P13994 396 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 ADRA1DP25100 572 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 PTPN4P29074 926 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 RPA3P35244 121 aaPredicted RBP15.1■□□□□ 0.01
HDAC6-220ENST00000477528 GEMP55040 296 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 FUKQ8N0W3 1084 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 JOSD2Q8TAC2 188 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 SRPK1Q96SB4 655 aaKnown RBP15.1■□□□□ 0.01
HDAC6-220ENST00000477528 ABCF3Q9NUQ8 709 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 ETNK2Q9NVF9 386 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 STARD13Q9Y3M8 1113 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 NRCAMQ92823 1304 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 DDX60Q8IY21 1712 aaKnown RBP15.1■□□□□ 0.01
HDAC6-220ENST00000477528 ACAT1P24752 427 aaKnown RBP15.1■□□□□ 0.01
HDAC6-220ENST00000477528 PCSK7Q16549 785 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 TAF2Q6P1X5 1199 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 NPNTQ6UXI9 565 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 TINF2Q9BSI4 451 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 GRHL1Q9NZI5 618 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 BTBD7Q9P203 1132 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 DSEQ9UL01 958 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 HOXC6P09630 235 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 SLC2A3P11169 496 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 PSEN2P49810 448 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 SLC45A4Q5BKX6 768 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 FNIP1Q8TF40 1166 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 HSFY1Q96LI6 401 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 UBA6A0AVT1 1052 aaPredicted RBP15.09■□□□□ 0.01
HDAC6-220ENST00000477528 NVLO15381 856 aaKnown RBP15.09■□□□□ 0.01
HDAC6-220ENST00000477528 ARF4P18085 180 aaPredicted RBP15.09■□□□□ 0.01
HDAC6-220ENST00000477528 GRK2P25098 689 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 GRM5P41594 1212 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 SLC12A1Q13621 1099 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 RABGAP1LQ5R372 815 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 ARHGAP18Q8N392 663 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.09■□□□□ 0.01
HDAC6-220ENST00000477528 RMDN1Q96DB5 314 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 AQP5P55064 265 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 NSUN2Q08J23 767 aaKnown RBP eCLIP15.09■□□□□ 0.01
HDAC6-220ENST00000477528 KBTBD12Q3ZCT8 623 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 SNRNP25Q9BV90 132 aaKnown RBP15.09■□□□□ 0.01
HDAC6-220ENST00000477528 KIF9Q9HAQ2 790 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 MRGBPQ9NV56 204 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 CACNA1SQ13698 1873 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 MYH1P12882 1939 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 SPDYE5A6NIY4 337 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 PIGRP01833 764 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 NOL9Q5SY16 702 aaKnown RBP15.09■□□□□ 0.01
HDAC6-220ENST00000477528 DCAF12L1Q5VU92 463 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 KRT80Q6KB66 452 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 FRA10AC1Q70Z53 315 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 SH3TC2Q8TF17 1288 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 C7orf43Q8WVR3 580 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 DNAJC9Q8WXX5 260 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 TLCD1Q96CP7 247 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 PPP1R36Q96LQ0 422 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 CENPKQ9BS16 269 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 BRD8Q9H0E9 1235 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 ACSS3Q9H6R3 686 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 SOWAHBA6NEL2 793 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 OR1G1P47890 313 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 RASA2Q15283 850 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 MIPOL1Q8TD10 442 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 ZNF670Q9BS34 389 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 PDGFCQ9NRA1 345 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 PLCH1Q4KWH8 1693 aa15.09■□□□□ 0.01
HDAC6-220ENST00000477528 COL1A2P08123 1366 aa15.08■□□□□ 0.01
HDAC6-220ENST00000477528 PAPPAQ13219 1627 aa15.08■□□□□ 0.01
HDAC6-220ENST00000477528 LOC102724159A0A0B4J2E5 919 aa15.08■□□□□ 0.01
HDAC6-220ENST00000477528 JCHAINP01591 159 aa15.08■□□□□ 0.01
HDAC6-220ENST00000477528 PGAM1P18669 254 aa15.08■□□□□ 0.01
HDAC6-220ENST00000477528 XPAP23025 273 aaPredicted RBP15.08■□□□□ 0.01
HDAC6-220ENST00000477528 PWP2Q15269 919 aaKnown RBP15.08■□□□□ 0.01
HDAC6-220ENST00000477528 TEDDM1Q5T9Z0 273 aa15.08■□□□□ 0.01
HDAC6-220ENST00000477528 MAP1SQ66K74 1059 aaPredicted RBP15.08■□□□□ 0.01
HDAC6-220ENST00000477528 STRA8Q7Z7C7 330 aa15.08■□□□□ 0.01
HDAC6-220ENST00000477528 SLC25A41Q8N5S1 370 aa15.08■□□□□ 0.01
HDAC6-220ENST00000477528 NKD2Q969F2 451 aaPredicted RBP15.08■□□□□ 0.01
HDAC6-220ENST00000477528 WNK4Q96J92 1243 aa15.08■□□□□ 0.01
HDAC6-220ENST00000477528 SPATS2LQ9NUQ6 558 aaKnown RBP15.08■□□□□ 0.01
HDAC6-220ENST00000477528 RNF103O00237 685 aa15.08■□□□□ 0
HDAC6-220ENST00000477528 KIF3CO14782 793 aa15.08■□□□□ 0
HDAC6-220ENST00000477528 PMPCBO75439 489 aa15.08■□□□□ 0
HDAC6-220ENST00000477528 TRPA1O75762 1119 aa15.08■□□□□ 0
HDAC6-220ENST00000477528 ERBB2P04626 1255 aa15.08■□□□□ 0
HDAC6-220ENST00000477528 COPAP53621 1224 aa15.08■□□□□ 0
HDAC6-220ENST00000477528 MOB2Q70IA6 237 aa15.08■□□□□ 0
HDAC6-220ENST00000477528 SETD3Q86TU7 594 aaPredicted RBP15.08■□□□□ 0
HDAC6-220ENST00000477528 ILKAPQ9H0C8 392 aaPredicted RBP15.08■□□□□ 0
HDAC6-220ENST00000477528 VANGL2Q9ULK5 521 aa15.08■□□□□ 0
HDAC6-220ENST00000477528 CDYLQ9Y232 598 aa15.08■□□□□ 0
HDAC6-220ENST00000477528 COL2A1P02458 1487 aaPredicted RBP15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms