RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 RPS6KA6Q9UK32 745 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 CLOCKO15516 846 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 IDH3BO43837 385 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 GUCY1B2O75343 617 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 HOXC6P09630 235 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 PRKAR1AP10644 381 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 CYP19A1P11511 503 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-209ENST00000472056 PPP3CCP48454 512 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 Q4G0T1 1027 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 PTCD3Q96EY7 689 aaKnown RBP13.68□□□□□ -0.22
COL6A3-209ENST00000472056 OXNAD1Q96HP4 312 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-209ENST00000472056 INTS13Q9NVM9 706 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 IRAK3Q9Y616 596 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 BTN3A3O00478 584 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 CASP4P49662 377 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 KPNA1P52294 538 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-209ENST00000472056 KIZQ2M2Z5 673 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 TKFCQ3LXA3 575 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 RNF43Q68DV7 783 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 NANOGNBQ7Z5D8 188 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 SCN4BQ8IWT1 228 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 MIER2Q8N344 545 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 KIF12Q96FN5 646 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 OTUD5Q96G74 571 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 KLHL11Q9NVR0 708 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 SCN8AQ9UQD0 1980 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 ZC3H4Q9UPT8 1303 aaKnown RBP13.68□□□□□ -0.22
COL6A3-209ENST00000472056 ZDHHC17Q8IUH5 632 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 MYLPFQ96A32 169 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 CPNE1Q99829 537 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 EMILIN2Q9BXX0 1053 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 AGPAT5Q9NUQ2 364 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 WWOXQ9NZC7 414 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 E9PBE3 544 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 ZBTB39O15060 712 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 PGM3O95394 542 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 ATP6V1B2P21281 511 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 HOXA13P31271 388 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-209ENST00000472056 RPL3P39023 403 aaKnown RBP13.68□□□□□ -0.22
COL6A3-209ENST00000472056 GRAPQ13588 217 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 ATP1A4Q13733 1029 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 KLHDC7AQ5VTJ3 777 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 ADGRF4Q8IZF3 695 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 GRAPLQ8TC17 118 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-209ENST00000472056 ADGRE3Q9BY15 652 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 ZNF341Q9BYN7 854 aa13.68□□□□□ -0.22
COL6A3-209ENST00000472056 USP17L8P0C7I0 530 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 ATP4AP20648 1035 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 OGNP20774 298 aaKnown RBP13.67□□□□□ -0.22
COL6A3-209ENST00000472056 GEMP55040 296 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 TBCELQ5QJ74 424 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 CHMP1BQ7LBR1 199 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 TSPAN14Q8NG11 270 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 PPP1R36Q96LQ0 422 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 MNTQ99583 582 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 SPASTQ9UBP0 616 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 A0A0B4J269 797 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 DDHD2O94830 711 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 SMIM11AP58511 58 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 TUBB3Q13509 450 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 COBLL1Q53SF7 1204 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 APOBEC3FQ8IUX4 373 aaKnown RBP13.67□□□□□ -0.22
COL6A3-209ENST00000472056 PPP1R10Q96QC0 940 aaKnown RBP13.67□□□□□ -0.22
COL6A3-209ENST00000472056 OSBPL6Q9BZF3 934 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 FAM217BQ9NTX9 383 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-209ENST00000472056 SNX9Q9Y5X1 595 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 CLUHO75153 1309 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 CST8O60676 142 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 ALDH1A2O94788 518 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 WDR72Q3MJ13 1102 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 ZNF394Q53GI3 561 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 C8orf59Q8N0T1 100 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-209ENST00000472056 SLIT1O75093 1534 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 ERI2A8K979 691 aaKnown RBP13.67□□□□□ -0.22
COL6A3-209ENST00000472056 HSMCR30P0CW71 290 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 UQCRBP14927 111 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 EIF2AK2P19525 551 aaKnown RBP13.67□□□□□ -0.22
COL6A3-209ENST00000472056 CAPGP40121 348 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 MROH9Q5TGP6 573 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 TMC3Q7Z5M5 1100 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 DAGLBQ8NCG7 672 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 MFHAS1Q9Y4C4 1052 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 ENPEPQ07075 957 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 PTGES3Q15185 160 aaKnown RBP13.67□□□□□ -0.22
COL6A3-209ENST00000472056 EURLQ9NYK6 297 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 MROH2AA6NES4 1674 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 ATN1P54259 1190 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-209ENST00000472056 ACMSDQ8TDX5 336 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 EVPLQ92817 2033 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 SKAP2O75563 359 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-209ENST00000472056 RPA1P27694 616 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 S100GP29377 79 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 SLC16A2P36021 539 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 HPCAL1P37235 193 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 DPYSQ14117 519 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 INSCQ1MX18 579 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 SCARA3Q6AZY7 606 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 PPP1R14AQ96A00 147 aa13.67□□□□□ -0.22
COL6A3-209ENST00000472056 ZNF669Q96BR6 464 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-209ENST00000472056 SRPK1Q96SB4 655 aaKnown RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms