RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 SFTPA1Q8IWL2 248 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 TCEAL8Q8IYN2 117 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 ELOA3Q8NG57 546 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 DCAF4Q8WV16 495 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 APOBEC4Q8WW27 367 aaKnown RBP5.5□□□□□ -1.53
HMGB1-207ENST00000468384 RABGGTAQ92696 567 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 PMEPA1Q969W9 287 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 TMEM74Q96NL1 305 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 INPP4AQ96PE3 977 aaPredicted RBP5.5□□□□□ -1.53
HMGB1-207ENST00000468384 ZCCHC2Q9C0B9 1178 aaKnown RBP5.5□□□□□ -1.53
HMGB1-207ENST00000468384 CYP4F11Q9HBI6 524 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 TM9SF3Q9HD45 589 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 ABCB6Q9NP58 842 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 BRD7Q9NPI1 651 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 EFR3BQ9Y2G0 817 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 ENTPD2Q9Y5L3 495 aa5.5□□□□□ -1.53
HMGB1-207ENST00000468384 DOCK5Q9H7D0 1870 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 BAZ2AQ9UIF9 1905 aaKnown RBP5.49□□□□□ -1.53
HMGB1-207ENST00000468384 M0R2C6 588 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 LRRTM2O43300 516 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 SASH3O75995 380 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 SORBS2O94875 1100 aaKnown RBP5.49□□□□□ -1.53
HMGB1-207ENST00000468384 SEC24AO95486 1093 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 ETFBP38117 255 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 PWP1Q13610 501 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 SEPT6Q14141 434 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 KIF26BQ2KJY2 2108 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 MIIPQ5JXC2 388 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 SFMBT2Q5VUG0 894 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 CEP135Q66GS9 1140 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 PARS2Q7L3T8 475 aaKnown RBP5.49□□□□□ -1.53
HMGB1-207ENST00000468384 MRPL10Q7Z7H8 261 aaKnown RBP5.49□□□□□ -1.53
HMGB1-207ENST00000468384 ZNF444Q8N0Y2 327 aaPredicted RBP5.49□□□□□ -1.53
HMGB1-207ENST00000468384 PPM1NQ8N819 430 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 ZNF461Q8TAF7 563 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 WFDC12Q8WWY7 111 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 TSR2Q969E8 191 aaKnown RBP5.49□□□□□ -1.53
HMGB1-207ENST00000468384 ERLEC1Q96DZ1 483 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 MRFAP1L1Q96HT8 127 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 FUBP3Q96I24 572 aaKnown RBP eCLIP5.49□□□□□ -1.53
HMGB1-207ENST00000468384 GPATCH3Q96I76 525 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 ZNF668Q96K58 619 aaPredicted RBP5.49□□□□□ -1.53
HMGB1-207ENST00000468384 ZNF512BQ96KM6 892 aaPredicted RBP5.49□□□□□ -1.53
HMGB1-207ENST00000468384 RHOVQ96L33 236 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 LRRC3Q9BY71 257 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 USP44Q9H0E7 712 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 ABCG4Q9H172 646 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 CDT1Q9H211 546 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 AZI2Q9H6S1 392 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 ANTXR1Q9H6X2 564 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 OSGEPQ9NPF4 335 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.49□□□□□ -1.53
HMGB1-207ENST00000468384 WSB2Q9NYS7 404 aaPredicted RBP5.49□□□□□ -1.53
HMGB1-207ENST00000468384 MTRRQ9UBK8 725 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 SALL4Q9UJQ4 1053 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 PCDHB2Q9Y5E7 798 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 ANK3Q12955 4377 aaKnown RBP5.49□□□□□ -1.53
HMGB1-207ENST00000468384 RYR2Q92736 4967 aa5.49□□□□□ -1.53
HMGB1-207ENST00000468384 DOCK9Q9BZ29 2069 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 TMEM238LA0A1B0GVL6 79 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 ANKUB1A6NFN9 424 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 CSDE1O75534 798 aaKnown RBP5.48□□□□□ -1.53
HMGB1-207ENST00000468384 PRDM1O75626 825 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 ABLIM3O94929 683 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 CENPBP07199 599 aaPredicted RBP5.48□□□□□ -1.53
HMGB1-207ENST00000468384 PARP1P09874 1014 aaKnown RBP5.48□□□□□ -1.53
HMGB1-207ENST00000468384 EDN3P14138 238 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 GARTP22102 1010 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 HTR1EP28566 365 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 EPHA8P29322 1005 aaPredicted RBP5.48□□□□□ -1.53
HMGB1-207ENST00000468384 NOS3P29474 1203 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 OPRD1P41143 372 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 KIR2DL1P43626 348 aaPredicted RBP5.48□□□□□ -1.53
HMGB1-207ENST00000468384 HSD17B4P51659 736 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 MRPS9P82933 396 aaKnown RBP5.48□□□□□ -1.53
HMGB1-207ENST00000468384 FAM160A1Q05DH4 1040 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 TWF1Q12792 350 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 DHX8Q14562 1220 aaKnown RBP5.48□□□□□ -1.53
HMGB1-207ENST00000468384 ZNF630Q2M218 657 aaPredicted RBP5.48□□□□□ -1.53
HMGB1-207ENST00000468384 EFHC2Q5JST6 749 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 CC2D1AQ6P1N0 951 aaPredicted RBP5.48□□□□□ -1.53
HMGB1-207ENST00000468384 PODNL1Q6PEZ8 512 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 ANKS3Q6ZW76 656 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 CCDC13Q8IYE1 715 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 NXPE1Q8N323 547 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 METTL13Q8N6R0 699 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 UBR7Q8N806 425 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 GIMAP8Q8ND71 665 aaPredicted RBP5.48□□□□□ -1.53
HMGB1-207ENST00000468384 OR13H1Q8NG92 308 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 HASPINQ8TF76 798 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 CHTF18Q8WVB6 975 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 SNX19Q92543 992 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 RBMXL1Q96E39 390 aaKnown RBP5.48□□□□□ -1.53
HMGB1-207ENST00000468384 RRP36Q96EU6 259 aaKnown RBP5.48□□□□□ -1.53
HMGB1-207ENST00000468384 TCF12Q99081 682 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 CRISPLD1Q9H336 500 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 LIN7BQ9HAP6 207 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 SEMA3GQ9NS98 782 aa5.48□□□□□ -1.53
HMGB1-207ENST00000468384 CCM2LQ9NUG4 571 aaPredicted RBP5.48□□□□□ -1.53
HMGB1-207ENST00000468384 PPP4R2Q9NY27 417 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms