RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 MIR1-1HGQ9H1L0 117 aa10.35□□□□□ -0.75
USP39-212ENST00000465514 SLC6A17Q9H1V8 727 aa10.35□□□□□ -0.75
USP39-212ENST00000465514 HSPBP1Q9NZL4 362 aa10.35□□□□□ -0.75
USP39-212ENST00000465514 CDH9Q9ULB4 789 aa10.35□□□□□ -0.75
USP39-212ENST00000465514 PCDHGB2Q9Y5G2 931 aa10.35□□□□□ -0.75
USP39-212ENST00000465514 A0A0A0MRY4 1105 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 LEFTY2O00292 366 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 ADH5P11766 374 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 KRT10P13645 584 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 WARSP23381 471 aaKnown RBP10.34□□□□□ -0.75
USP39-212ENST00000465514 HNF1BP35680 557 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 GRIK1P39086 918 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 USP46P62068 366 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 RHDQ02161 417 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 CYP27A1Q02318 531 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 STK38Q15208 465 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 MAPRE1Q15691 268 aaKnown RBP10.34□□□□□ -0.75
USP39-212ENST00000465514 COLEC12Q5KU26 742 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 IL27RAQ6UWB1 636 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 VSTM1Q6UX27 236 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 TRAPPC11Q7Z392 1133 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 PRICKLE2Q7Z3G6 844 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 TRMT11Q7Z4G4 463 aaKnown RBP10.34□□□□□ -0.75
USP39-212ENST00000465514 MIB1Q86YT6 1006 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 WDR49Q8IV35 697 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 RDH13Q8NBN7 331 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 DNASE2BQ8WZ79 361 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 MMS19Q96T76 1030 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 TRIM4Q9C037 500 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 LRRC27Q9C0I9 530 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 TNMDQ9H2S6 317 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 ZSCAN16Q9H4T2 348 aaPredicted RBP10.34□□□□□ -0.75
USP39-212ENST00000465514 KIAA1586Q9HCI6 787 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 TRPM5Q9NZQ8 1165 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 GMIPQ9P107 970 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 RELNP78509 3460 aa10.34□□□□□ -0.75
USP39-212ENST00000465514 NUMA1Q14980 2115 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.33□□□□□ -0.76
USP39-212ENST00000465514 BCAT2O15382 392 aaPredicted RBP10.33□□□□□ -0.76
USP39-212ENST00000465514 ADH1CP00326 375 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 CST3P01034 146 aaPredicted RBP10.33□□□□□ -0.76
USP39-212ENST00000465514 DLATP10515 647 aaKnown RBP10.33□□□□□ -0.76
USP39-212ENST00000465514 JUPP14923 745 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 ANXA13P27216 316 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 GNL1P36915 607 aaPredicted RBP10.33□□□□□ -0.76
USP39-212ENST00000465514 NASPP49321 788 aaPredicted RBP10.33□□□□□ -0.76
USP39-212ENST00000465514 PDE6CP51160 858 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 KCNH2Q12809 1159 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 E2F4Q16254 413 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 MDH1BQ5I0G3 518 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 RHBDF2Q6PJF5 856 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 DENND5BQ6ZUT9 1274 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 EPM2AIP1Q7L775 607 aaPredicted RBP10.33□□□□□ -0.76
USP39-212ENST00000465514 ADGRG2Q8IZP9 1017 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 LINC00301Q8NCQ3 95 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 MYCBPAPQ8TBZ2 947 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 ZNF507Q8TCN5 953 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 FGF11Q92914 225 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 PCED1BQ96HM7 432 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 INTS4Q96HW7 963 aaKnown RBP10.33□□□□□ -0.76
USP39-212ENST00000465514 CEP295NLQ96MC4 621 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 MRPL45Q9BRJ2 306 aaKnown RBP10.33□□□□□ -0.76
USP39-212ENST00000465514 TRIM9Q9C026 710 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 SNX25Q9H3E2 840 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 CD248Q9HCU0 757 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 KBTBD4Q9NVX7 518 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 TFIP11Q9UBB9 837 aaKnown RBP10.33□□□□□ -0.76
USP39-212ENST00000465514 HCN2Q9UL51 889 aa10.33□□□□□ -0.76
USP39-212ENST00000465514 UTP20O75691 2785 aaKnown RBP10.33□□□□□ -0.76
USP39-212ENST00000465514 A0A1B0GVT2 93 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 TBC1D3BA6NDS4 549 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 ZNF840PA6NDX5 716 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 F8VP50 259 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 TRIM66O15016 1216 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 CLIC2O15247 247 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 SPTLC2O15270 562 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 EIF3DO15371 548 aaKnown RBP eCLIP10.32□□□□□ -0.76
USP39-212ENST00000465514 ZBTB24O43167 697 aaPredicted RBP10.32□□□□□ -0.76
USP39-212ENST00000465514 TGFB1I1O43294 461 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 STX6O43752 255 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 BRINP1O60477 761 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 ABL1P00519 1130 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 NCAM1P13591 858 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 PFKLP17858 780 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 PTPN1P18031 435 aaKnown RBP10.32□□□□□ -0.76
USP39-212ENST00000465514 TNNI1P19237 187 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 CD6P30203 668 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 NTSR1P30989 418 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 GRK6P43250 576 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 CYP2J2P51589 502 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 ASIC1P78348 528 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 AMPD3Q01432 767 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 RTP5Q14D33 572 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 SUZ12Q15022 739 aaKnown RBP10.32□□□□□ -0.76
USP39-212ENST00000465514 SNRNP35Q16560 246 aaKnown RBP10.32□□□□□ -0.76
USP39-212ENST00000465514 PKDCCQ504Y2 493 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 C10orf76Q5T2E6 689 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 EGFLAMQ63HQ2 1017 aa10.32□□□□□ -0.76
USP39-212ENST00000465514 KIAA1324Q6UXG2 1013 aaKnown RBP10.32□□□□□ -0.76
USP39-212ENST00000465514 HS2ST1Q7LGA3 356 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms