RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ZC3H7BQ9UGR2 993 aaKnown RBP12.9□□□□□ -0.34
HDAC4-208ENST00000463007 LNPEPQ9UIQ6 1025 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 PLXNA1Q9UIW2 1896 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 SIGLEC16A6NMB1 481 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 OR6B1O95007 311 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 ITGBL1O95965 494 aaPredicted RBP12.9□□□□□ -0.34
HDAC4-208ENST00000463007 RPL10AP62906 217 aaKnown RBP12.9□□□□□ -0.34
HDAC4-208ENST00000463007 BTKQ06187 659 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 AP1B1Q10567 949 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 PRKD1Q15139 912 aaPredicted RBP12.9□□□□□ -0.34
HDAC4-208ENST00000463007 C11orf91Q3C1V1 193 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 PTPN20Q4JDL3 420 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 RNF148Q8N7C7 305 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 CEP120Q8N960 986 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 NAT8LQ8N9F0 302 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 PRPF31Q8WWY3 499 aaKnown RBP12.9□□□□□ -0.34
HDAC4-208ENST00000463007 APOPT1Q96IL0 206 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 CEP41Q9BYV8 373 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 TXNRD2Q9NNW7 524 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 MAN1C1Q9NR34 630 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 PPP1R1BQ9UD71 204 aaPredicted RBP12.9□□□□□ -0.34
HDAC4-208ENST00000463007 KCNH4Q9UQ05 1017 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 RNASEH1O60930 286 aaKnown RBP12.89□□□□□ -0.35
HDAC4-208ENST00000463007 ITGAVP06756 1048 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 TBXAS1P24557 533 aaPredicted RBP12.89□□□□□ -0.35
HDAC4-208ENST00000463007 DSG1Q02413 1049 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 C1QBPQ07021 282 aaKnown RBP12.89□□□□□ -0.35
HDAC4-208ENST00000463007 WDR49Q8IV35 697 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 WDTC1Q8N5D0 677 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 ARFGAP1Q8N6T3 406 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 ACO2Q99798 780 aaKnown RBP12.89□□□□□ -0.35
HDAC4-208ENST00000463007 NGRNQ9NPE2 291 aaKnown RBP12.89□□□□□ -0.35
HDAC4-208ENST00000463007 CPSF3Q9UKF6 684 aaKnown RBP12.89□□□□□ -0.35
HDAC4-208ENST00000463007 MYOCOSA0A1B0GUC4 107 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 TRAFD1O14545 582 aaPredicted RBP12.89□□□□□ -0.35
HDAC4-208ENST00000463007 TM9SF1O15321 606 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 GJB1P08034 283 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 GRIA1P42261 906 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 ABCG1P45844 678 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 LY6KQ17RY6 165 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 ARHGAP24Q8N264 748 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 SEPT1Q8WYJ6 367 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 EPAS1Q99814 870 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 MAGEB5Q9BZ81 275 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 PHACTR1Q9C0D0 580 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 ADM5C9JUS6 153 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 PROCP04070 461 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 ATP6V1B1P15313 513 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 KDELR1P24390 212 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 CDH5P33151 784 aaPredicted RBP12.89□□□□□ -0.35
HDAC4-208ENST00000463007 RGS7P49802 495 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 PPP2R5DQ14738 602 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 LBRQ14739 615 aaKnown RBP12.89□□□□□ -0.35
HDAC4-208ENST00000463007 R3HDM1Q15032 1099 aaKnown RBP12.89□□□□□ -0.35
HDAC4-208ENST00000463007 HSDL1Q3SXM5 330 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 RABGAP1LQ5R372 815 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 PLPPR4Q7Z2D5 763 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 CRLF3Q8IUI8 442 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 RELL1Q8IUW5 271 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 B4GALNT2Q8NHY0 566 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 SLC35B2Q8TB61 432 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 UBE2OQ9C0C9 1292 aaKnown RBP12.89□□□□□ -0.35
HDAC4-208ENST00000463007 XYLT2Q9H1B5 865 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 ANGPTL2Q9UKU9 493 aa12.89□□□□□ -0.35
HDAC4-208ENST00000463007 FARP1Q9Y4F1 1045 aaPredicted RBP12.89□□□□□ -0.35
HDAC4-208ENST00000463007 CALB1P05937 261 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 HOXC6P09630 235 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 SPATA31D3P0C874 917 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 MIPP30301 263 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 RPS6KA3P51812 740 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 EFNA5P52803 228 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 AP2B1P63010 937 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 PRKG1Q13976 671 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 TRIP10Q15642 601 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 HADHQ16836 314 aaKnown RBP12.88□□□□□ -0.35
HDAC4-208ENST00000463007 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.88□□□□□ -0.35
HDAC4-208ENST00000463007 HSF5Q4G112 596 aaPredicted RBP12.88□□□□□ -0.35
HDAC4-208ENST00000463007 CELF3Q5SZQ8 465 aaKnown RBP12.88□□□□□ -0.35
HDAC4-208ENST00000463007 FAM102AQ5T9C2 384 aaPredicted RBP12.88□□□□□ -0.35
HDAC4-208ENST00000463007 CES3Q6UWW8 571 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 SPATA31D4Q6ZUB0 917 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 CPXM1Q96SM3 734 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 FOXP3Q9BZS1 431 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 ARHGEF4Q9NR80 690 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 NRBP2Q9NSY0 501 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 RNF19AQ9NV58 838 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 CYTH4Q9UIA0 394 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 ASB3Q9Y575 518 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 GAS2O43903 313 aaKnown RBP12.88□□□□□ -0.35
HDAC4-208ENST00000463007 RNF8O76064 485 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 AP3M2P53677 418 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 PDE1BQ01064 536 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 OCRLQ01968 901 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 LAMTOR4Q0VGL1 99 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 CDC16Q13042 620 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 CUL3Q13618 768 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 FAM160B1Q5W0V3 765 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 TMPRSS6Q8IU80 811 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 MFN1Q8IWA4 741 aa12.88□□□□□ -0.35
HDAC4-208ENST00000463007 MPP5Q8N3R9 675 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms