RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 DCLK3Q9C098 648 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 TSPY26PQ9H489 355 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 EBF3Q9H4W6 596 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 ECT2Q9H8V3 914 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 ACP6Q9NPH0 428 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 ST7Q9NRC1 585 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 MARCH2Q9P0N8 246 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 RASAL2Q9UJF2 1139 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 SIT1Q9Y3P8 196 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 HBS1LQ9Y450 684 aaKnown RBP12.42□□□□□ -0.42
VPS52-213ENST00000461743 WNT6Q9Y6F9 365 aa12.42□□□□□ -0.42
VPS52-213ENST00000461743 SHISA7A6NL88 538 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 E5RJQ4 531 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 EPHB6O15197 1021 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 LATS1O95835 1130 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 TPM3P06753 285 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 TARSP26639 723 aaKnown RBP12.41□□□□□ -0.42
VPS52-213ENST00000461743 SCNN1AP37088 669 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 VCPP55072 806 aaKnown RBP12.41□□□□□ -0.42
VPS52-213ENST00000461743 FANCCQ00597 558 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 TNK2Q07912 1038 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 UBXN2BQ14CS0 331 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 FIGNQ5HY92 759 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 DGKKQ5KSL6 1271 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 IER5LQ5T953 404 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 BSPRYQ5W0U4 402 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 TRIM68Q6AZZ1 485 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 TOGARAM2Q6ZUX3 1019 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 CACNA2D4Q7Z3S7 1137 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 GPIHBP1Q8IV16 184 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 ZNF687Q8N1G0 1237 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 SYNPOQ8N3V7 929 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 TMEM105Q8N8V8 129 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 C1orf131Q8NDD1 294 aaKnown RBP12.41□□□□□ -0.42
VPS52-213ENST00000461743 DDX1Q92499 740 aaKnown RBP12.41□□□□□ -0.42
VPS52-213ENST00000461743 CLDN23Q96B33 292 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 PPP1R13BQ96KQ4 1090 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 EDEM3Q9BZQ6 932 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 FOXQ1Q9C009 403 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 PDCL3Q9H2J4 239 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 NLRC4Q9NPP4 1024 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 CYTH4Q9UIA0 394 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 NOCTQ9UK39 431 aaKnown RBP12.41□□□□□ -0.42
VPS52-213ENST00000461743 DOCK4Q8N1I0 1966 aa12.41□□□□□ -0.42
VPS52-213ENST00000461743 NYNRINQ9P2P1 1898 aaKnown RBP12.4□□□□□ -0.42
VPS52-213ENST00000461743 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.4□□□□□ -0.42
VPS52-213ENST00000461743 STK25O00506 426 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 TRDMT1O14717 391 aaKnown RBP12.4□□□□□ -0.42
VPS52-213ENST00000461743 TEX33O43247 280 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 PAPSS1O43252 624 aaPredicted RBP12.4□□□□□ -0.42
VPS52-213ENST00000461743 GALR2O43603 387 aaPredicted RBP12.4□□□□□ -0.42
VPS52-213ENST00000461743 GREM1O60565 184 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 HSF2BPO75031 334 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 GABBR2O75899 941 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 STC2O76061 302 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 GFPT2O94808 682 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 TBX18O95935 607 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 CYP17A1P05093 508 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 ARSAP15289 507 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 FERP16591 822 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 GJA4P35212 333 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 ZNF445P59923 1031 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 CDR2Q01850 454 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 EFEMP1Q12805 493 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 NR1I3Q14994 352 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 GLIPR1L2Q4G1C9 344 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 EFHC1Q5JVL4 640 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 PPP1R2P3Q6NXS1 205 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 Q6ZNB5 142 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 NOP9Q86U38 636 aaKnown RBP12.4□□□□□ -0.42
VPS52-213ENST00000461743 PASD1Q8IV76 773 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 CCDC26Q8TAB7 109 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 SERPINB11Q96P15 392 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 CPXM1Q96SM3 734 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 IRX2Q9BZI1 471 aaPredicted RBP12.4□□□□□ -0.42
VPS52-213ENST00000461743 IRF2BPLQ9H1B7 796 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 SYNCQ9H7C4 482 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 POPDC2Q9HBU9 364 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 TMEM51Q9NW97 253 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 MARK1Q9P0L2 795 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 DLGAP2Q9P1A6 1054 aa12.4□□□□□ -0.42
VPS52-213ENST00000461743 PLXND1Q9Y4D7 1925 aa12.39□□□□□ -0.43
VPS52-213ENST00000461743 FAM170BA6NMN3 283 aa12.39□□□□□ -0.43
VPS52-213ENST00000461743 MDM4O15151 490 aa12.39□□□□□ -0.43
VPS52-213ENST00000461743 HOXC11O43248 304 aaPredicted RBP12.39□□□□□ -0.43
VPS52-213ENST00000461743 IRF1P10914 325 aa12.39□□□□□ -0.43
VPS52-213ENST00000461743 ADH5P11766 374 aa12.39□□□□□ -0.43
VPS52-213ENST00000461743 DRD1P21728 446 aa12.39□□□□□ -0.43
VPS52-213ENST00000461743 CHKAP35790 457 aa12.39□□□□□ -0.43
VPS52-213ENST00000461743 GABRB2P47870 512 aa12.39□□□□□ -0.43
VPS52-213ENST00000461743 NOMO3P69849 1222 aa12.39□□□□□ -0.43
VPS52-213ENST00000461743 RING1Q06587 406 aa12.39□□□□□ -0.43
VPS52-213ENST00000461743 CCINQ13939 588 aa12.39□□□□□ -0.43
VPS52-213ENST00000461743 DHCR24Q15392 516 aa12.39□□□□□ -0.43
VPS52-213ENST00000461743 TRIP4Q15650 581 aaPredicted RBP12.39□□□□□ -0.43
VPS52-213ENST00000461743 PREPLQ4J6C6 727 aaPredicted RBP12.39□□□□□ -0.43
VPS52-213ENST00000461743 PTPN20Q4JDL3 420 aa12.39□□□□□ -0.43
VPS52-213ENST00000461743 TMEM196Q5HYL7 178 aa12.39□□□□□ -0.43
VPS52-213ENST00000461743 NUGGCQ68CJ6 796 aa12.39□□□□□ -0.43
VPS52-213ENST00000461743 SLC26A9Q7LBE3 791 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms