RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 LRMPQ12912 555 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 CRY1Q16526 586 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 PLK5Q496M5 336 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 AASDHQ4L235 1098 aaPredicted RBP14.66□□□□□ -0.06
USP4-206ENST00000461553 USP39Q53GS9 565 aaKnown RBP14.66□□□□□ -0.06
USP4-206ENST00000461553 C10orf76Q5T2E6 689 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 GRAMD4Q6IC98 578 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 RSRC2Q7L4I2 434 aaKnown RBP14.66□□□□□ -0.06
USP4-206ENST00000461553 RASSF3Q86WH2 238 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 MIB1Q86YT6 1006 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 SFTPA1Q8IWL2 248 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 PHTF2Q8N3S3 785 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 C12orf50Q8NA57 414 aaPredicted RBP14.66□□□□□ -0.06
USP4-206ENST00000461553 IL17RCQ8NAC3 791 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 ANKRD52Q8NB46 1076 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 MDGA1Q8NFP4 955 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 NELFBQ8WX92 580 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 NT5C1BQ96P26 610 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 BBS2Q9BXC9 721 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 ARRDC1-AS1Q9H2J1 176 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 POLMQ9NP87 494 aaPredicted RBP14.66□□□□□ -0.06
USP4-206ENST00000461553 DNAJC17Q9NVM6 304 aaKnown RBP14.66□□□□□ -0.06
USP4-206ENST00000461553 PCDHGA5Q9Y5G8 931 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 LAMA1P25391 3075 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.65□□□□□ -0.06
USP4-206ENST00000461553 XPO1O14980 1071 aaKnown RBP14.65□□□□□ -0.06
USP4-206ENST00000461553 CACNG3O60359 315 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 TYRP14679 529 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 MPLP40238 635 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 KIR2DL1P43626 348 aaPredicted RBP14.65□□□□□ -0.06
USP4-206ENST00000461553 TKTL1P51854 596 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 EFEMP1Q12805 493 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 PAK1Q13153 545 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 RAB41Q5JT25 222 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 TTI2Q6NXR4 508 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 FOXR2Q6PJQ5 311 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 TPGS1Q6ZTW0 290 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 SCD5Q86SK9 330 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 TMEM25Q86YD3 366 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 ZNF276Q8N554 614 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 ZNF513Q8N8E2 541 aaPredicted RBP14.65□□□□□ -0.06
USP4-206ENST00000461553 ZC3H10Q96K80 434 aaKnown RBP14.65□□□□□ -0.06
USP4-206ENST00000461553 SPACA7Q96KW9 195 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 UBXN6Q9BZV1 441 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 LRRC4Q9HBW1 653 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 MARK1Q9P0L2 795 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 BCCIPQ9P287 314 aaKnown RBP eCLIP14.65□□□□□ -0.06
USP4-206ENST00000461553 WDR35Q9P2L0 1181 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 STRIP2Q9ULQ0 834 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 ZNF510Q9Y2H8 683 aa14.65□□□□□ -0.06
USP4-206ENST00000461553 A0A0A0MRY4 1105 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 ANTXRLA6NF34 631 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 SGK1O00141 431 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 BIN1O00499 593 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 GREM1O60565 184 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 GADD45BO75293 160 aaPredicted RBP14.64□□□□□ -0.07
USP4-206ENST00000461553 STC2O76061 302 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 SETSIPP0DME0 302 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 ATXN1P54253 815 aaKnown RBP14.64□□□□□ -0.07
USP4-206ENST00000461553 YWHAGP61981 247 aaKnown RBP eCLIP14.64□□□□□ -0.07
USP4-206ENST00000461553 COG7P83436 770 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 PDE4CQ08493 712 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 MORC3Q14149 939 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 TMEM270Q6UE05 265 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 TMEM92Q6UXU6 159 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 Q6ZNB5 142 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 SIX6OS1Q8N1H7 587 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 PPM1KQ8N3J5 372 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 KCNV2Q8TDN2 545 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 IPO9Q96P70 1041 aaKnown RBP14.64□□□□□ -0.07
USP4-206ENST00000461553 ULBP1Q9BZM6 244 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 DCLK3Q9C098 648 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 DUSP15Q9H1R2 295 aaPredicted RBP14.64□□□□□ -0.07
USP4-206ENST00000461553 ZDHHC4Q9NPG8 344 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 CKAP5Q14008 2032 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 GON4LQ3T8J9 2241 aa14.64□□□□□ -0.07
USP4-206ENST00000461553 TCRBV21S2A2A0A5A6 115 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 MED19A0JLT2 244 aaPredicted RBP14.63□□□□□ -0.07
USP4-206ENST00000461553 PPP1R3GB7ZBB8 358 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 DCLK1O15075 740 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 PMM2O15305 246 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 P4HA2O15460 535 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 GNA14O95837 355 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 ZBED1O96006 694 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 HMBSP08397 361 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 CHRM1P11229 460 aaPredicted RBP14.63□□□□□ -0.07
USP4-206ENST00000461553 VDRP11473 427 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 CORO1AP31146 461 aaKnown RBP14.63□□□□□ -0.07
USP4-206ENST00000461553 DGKGP49619 791 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 ADIGQ0VDE8 80 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 CCDC6Q16204 474 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 PMS2CLQ68D20 193 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 UBR7Q8N806 425 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 HMGB4Q8WW32 186 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 BHMTQ93088 406 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 VPS45Q9NRW7 570 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 OLA1Q9NTK5 396 aaKnown RBP14.63□□□□□ -0.07
USP4-206ENST00000461553 MARCH2Q9P0N8 246 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 PCDHB4Q9Y5E5 795 aa14.63□□□□□ -0.07
USP4-206ENST00000461553 M0QYV0 167 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms