RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 SLC45A4Q5BKX6 768 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 LVRNQ6Q4G3 990 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 PSTKQ8IV42 348 aaKnown RBP15.65■□□□□ 0.1
LDLR-202ENST00000455727 FITM2Q8N6M3 262 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 TOP6BLQ8N6T0 577 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 CCDC63Q8NA47 563 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 CLEC4CQ8WTT0 213 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 MTMR10Q9NXD2 777 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.65■□□□□ 0.16e-8■□□□□ 8.2
LDLR-202ENST00000455727 AP4E1Q9UPM8 1137 aa15.65■□□□□ 0.1
LDLR-202ENST00000455727 XPO1O14980 1071 aaKnown RBP15.64■□□□□ 0.09
LDLR-202ENST00000455727 TREHO43280 583 aa15.64■□□□□ 0.09
LDLR-202ENST00000455727 HCRTO43612 131 aa15.64■□□□□ 0.09
LDLR-202ENST00000455727 MGRN1O60291 552 aa15.64■□□□□ 0.09
LDLR-202ENST00000455727 HUS1O60921 280 aa15.64■□□□□ 0.09
LDLR-202ENST00000455727 LCP1P13796 627 aa15.64■□□□□ 0.09
LDLR-202ENST00000455727 YWHAZP63104 245 aaKnown RBP15.64■□□□□ 0.09
LDLR-202ENST00000455727 FAM47EQ6ZV65 393 aa15.64■□□□□ 0.09
LDLR-202ENST00000455727 PARP9Q8IXQ6 854 aa15.64■□□□□ 0.09
LDLR-202ENST00000455727 SLC2A14Q8TDB8 520 aa15.64■□□□□ 0.09
LDLR-202ENST00000455727 HNRNPABQ99729 332 aaKnown RBP15.64■□□□□ 0.09
LDLR-202ENST00000455727 VPS11Q9H270 941 aa15.64■□□□□ 0.09
LDLR-202ENST00000455727 RNF39Q9H2S5 420 aa15.64■□□□□ 0.09
LDLR-202ENST00000455727 DHX35Q9H5Z1 703 aaKnown RBP15.64■□□□□ 0.09
LDLR-202ENST00000455727 KLK14Q9P0G3 267 aa15.64■□□□□ 0.09
LDLR-202ENST00000455727 RCOR3Q9P2K3 495 aaPredicted RBP15.64■□□□□ 0.09
LDLR-202ENST00000455727 IKBKGQ9Y6K9 419 aa15.64■□□□□ 0.09
LDLR-202ENST00000455727 LRPAP1P30533 357 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 SKIV2L2P42285 1042 aaKnown RBP15.63■□□□□ 0.09
LDLR-202ENST00000455727 MATKP42679 507 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 LILRA4P59901 499 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 MGAT5Q09328 741 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 KBTBD12Q3ZCT8 623 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 CAND1Q86VP6 1230 aaKnown RBP15.63■□□□□ 0.09
LDLR-202ENST00000455727 ECHDC2Q86YB7 292 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 AGGF1Q8N302 714 aaeCLIP15.63■□□□□ 0.09
LDLR-202ENST00000455727 ZNF75CPQ92670 426 aaPredicted RBP15.63■□□□□ 0.09
LDLR-202ENST00000455727 RMDN2Q96LZ7 410 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 KATNAL1Q9BW62 490 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 ADAM33Q9BZ11 813 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 ETNK1Q9HBU6 452 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 FLRT1Q9NZU1 646 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 C1QAP02745 245 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 MT-ND3P03897 115 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 INHBAP08476 426 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 TPSB2P20231 275 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 HOXC8P31273 242 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 MAGEA3P43357 314 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 NCALDP61601 193 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 YWHAGP61981 247 aaKnown RBP eCLIP15.63■□□□□ 0.09
LDLR-202ENST00000455727 SLC18A2Q05940 514 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 SOX4Q06945 474 aaPredicted RBP15.63■□□□□ 0.09
LDLR-202ENST00000455727 PTK7Q13308 1070 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 MTM1Q13496 603 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 TPSAB1Q15661 275 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 ADGRF2Q8IZF7 708 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 ZNF276Q8N554 614 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 SMG8Q8ND04 991 aaKnown RBP15.63■□□□□ 0.09
LDLR-202ENST00000455727 CSPG4P5Q96PW8 444 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 RNF19AQ9NV58 838 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 ZNF180Q9UJW8 692 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 IPPQ9Y573 584 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 USH1CQ9Y6N9 552 aa15.63■□□□□ 0.09
LDLR-202ENST00000455727 AVILO75366 819 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 APRTP07741 180 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 GNAT1P11488 350 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 SLC8A3P57103 927 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 ELF3P78545 371 aaPredicted RBP15.62■□□□□ 0.09
LDLR-202ENST00000455727 SLC10A2Q12908 348 aaPredicted RBP15.62■□□□□ 0.09
LDLR-202ENST00000455727 SEPT7Q16181 437 aaKnown RBP15.62■□□□□ 0.09
LDLR-202ENST00000455727 SLC25A52Q3SY17 297 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 ZNF618Q5T7W0 954 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 ICE2Q659A1 982 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 SH2D5Q6ZV89 423 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 BZW1Q7L1Q6 419 aaKnown RBP15.62■□□□□ 0.09
LDLR-202ENST00000455727 SLC26A11Q86WA9 606 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 VPS52Q8N1B4 723 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 B3GALNT2Q8NCR0 500 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 TCP10LQ8TDR4 215 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 PPP1R13LQ8WUF5 828 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 QKIQ96PU8 341 aaKnown RBP eCLIP15.62■□□□□ 0.09
LDLR-202ENST00000455727 KCTD15Q96SI1 283 aaPredicted RBP15.62■□□□□ 0.09
LDLR-202ENST00000455727 DUSP16Q9BY84 665 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 ECT2Q9H8V3 914 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 POPDC2Q9HBU9 364 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 CPA4Q9UI42 421 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 GGT7Q9UJ14 662 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 C17orf102A2RUQ5 167 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 HACD1B0YJ81 288 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 ALADP13716 330 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 PRKCHP24723 683 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 GBE1Q04446 702 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 CCDC110Q8TBZ0 833 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 MAGEC3Q8TD91 643 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 KCTD13Q8WZ19 329 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 SPOCK2Q92563 424 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 APBB2Q92870 758 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 AP5M1Q9H0R1 490 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 SLCO1B3Q9NPD5 702 aa15.62■□□□□ 0.09
LDLR-202ENST00000455727 ZC3H7BQ9UGR2 993 aaKnown RBP15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms