RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 MSANTD2Q6P1R3 559 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 DNAAF5Q86Y56 855 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 NPAS3Q8IXF0 933 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 TXLNBQ8N3L3 684 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.11□□□□□ -0.47
SCN9A-204ENST00000452182 FGF13Q92913 245 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 NT5C3BQ969T7 300 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 PACSIN1Q9BY11 444 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 TMEM51Q9NW97 253 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 RRN3Q9NYV6 651 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 FAM50BQ9Y247 325 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 USTQ9Y2C2 406 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 REXO2Q9Y3B8 237 aaKnown RBP12.11□□□□□ -0.47
SCN9A-204ENST00000452182 NUP210Q8TEM1 1887 aaPredicted RBP12.11□□□□□ -0.47
SCN9A-204ENST00000452182 FAM170AA1A519 330 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 C2orf78A6NCI8 922 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 ABL1P00519 1130 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 NCAM1P13591 858 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 GJA1P17302 382 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 CEBPBP17676 345 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 MATKP42679 507 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 GPR158Q5T848 1215 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 TXNDC8Q6A555 127 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 DEFB106AQ8N104 65 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 MAB21L3Q8N8X9 362 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 FNIP1Q8TF40 1166 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 RNF139Q8WU17 664 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 DDX23Q9BUQ8 820 aaKnown RBP12.11□□□□□ -0.47
SCN9A-204ENST00000452182 SLC46A2Q9BY10 475 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 KCNF1Q9H3M0 494 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 CCSER2Q9H7U1 834 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 METTL5Q9NRN9 209 aaKnown RBP12.11□□□□□ -0.47
SCN9A-204ENST00000452182 UVRAGQ9P2Y5 699 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 CDH7Q9ULB5 785 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 ADGRG1Q9Y653 693 aa12.11□□□□□ -0.47
SCN9A-204ENST00000452182 DOCK8Q8NF50 2099 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 TRAV19A0A0A6YYK7 116 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 C2orf72A6NCS6 295 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 TMEM191CA6NGB0 347 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 C2CD4BA6NLJ0 364 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 CAPN9O14815 690 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 PJA2O43164 708 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 COCHO43405 550 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 GRAP2O75791 330 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 HDCP19113 662 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 RFC1P35251 1148 aaPredicted RBP12.1□□□□□ -0.47
SCN9A-204ENST00000452182 ATP5C1P36542 298 aaKnown RBP12.1□□□□□ -0.47
SCN9A-204ENST00000452182 FLT3P36888 993 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 VAV2P52735 878 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 SLC7A9P82251 487 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 AAK1Q2M2I8 961 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 DCAF6Q58WW2 860 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 STXBP5Q5T5C0 1151 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 SYPL2Q5VXT5 272 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 DCUN1D2Q6PH85 259 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 RSRC2Q7L4I2 434 aaKnown RBP12.1□□□□□ -0.47
SCN9A-204ENST00000452182 GET4Q7L5D6 327 aaPredicted RBP12.1□□□□□ -0.47
SCN9A-204ENST00000452182 OTOP3Q7RTS5 596 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 RHOT2Q8IXI1 618 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 CMTM8Q8IZV2 173 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 ACRBPQ8NEB7 543 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 JOSD2Q8TAC2 188 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 EDEM1Q92611 657 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 RNF38Q9H0F5 515 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 SMOC2Q9H3U7 446 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.1□□□□□ -0.47
SCN9A-204ENST00000452182 THEGQ9P2T0 379 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 DNMT3LQ9UJW3 386 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 STAP1Q9ULZ2 295 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 NAALADL1Q9UQQ1 740 aa12.1□□□□□ -0.47
SCN9A-204ENST00000452182 HELZP42694 1942 aaKnown RBP12.1□□□□□ -0.47
SCN9A-204ENST00000452182 A0A0A6YYK5 440 aaPredicted RBP12.09□□□□□ -0.47
SCN9A-204ENST00000452182 BTNL10A8MVZ5 291 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 DPYSL4O14531 572 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 MTA2O94776 668 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 IGLV3-25P01717 112 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 AVPR1AP37288 418 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 PTPN9P43378 593 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 RNASE9P60153 205 aaKnown RBP12.09□□□□□ -0.47
SCN9A-204ENST00000452182 RPL7AP62424 266 aaKnown RBP12.09□□□□□ -0.47
SCN9A-204ENST00000452182 NNTQ13423 1086 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 EIF4EBP2Q13542 120 aaPredicted RBP12.09□□□□□ -0.47
SCN9A-204ENST00000452182 SLC25A52Q3SY17 297 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 C10orf120Q5SQS8 335 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 PTCRAQ6ISU1 281 aaPredicted RBP12.09□□□□□ -0.47
SCN9A-204ENST00000452182 TRNP1Q6NT89 227 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 POTEHQ6S545 545 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 BNIPLQ7Z465 357 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 PHLDB2Q86SQ0 1253 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 PLPP6Q8IY26 295 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 DQX1Q8TE96 717 aaKnown RBP12.09□□□□□ -0.47
SCN9A-204ENST00000452182 ING5Q8WYH8 240 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 RFFLQ8WZ73 363 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 ARHGEF26Q96DR7 871 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 PGAP3Q96FM1 320 aaPredicted RBP12.09□□□□□ -0.47
SCN9A-204ENST00000452182 ZSWIM3Q96MP5 696 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 MCEEQ96PE7 176 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 SLC22A12Q96S37 553 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 NPY6RQ99463 290 aa12.09□□□□□ -0.47
SCN9A-204ENST00000452182 NUP85Q9BW27 656 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms