RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 LMO3Q8TAP4 145 aa10.16□□□□□ -0.78
USP54-207ENST00000451492 USP33Q8TEY7 942 aa10.16□□□□□ -0.78
USP54-207ENST00000451492 CLEC4CQ8WTT0 213 aa10.16□□□□□ -0.78
USP54-207ENST00000451492 TFAP2BQ92481 460 aa10.16□□□□□ -0.78
USP54-207ENST00000451492 OTUB2Q96DC9 234 aa10.16□□□□□ -0.78
USP54-207ENST00000451492 NUP62CLQ9H1M0 184 aa10.16□□□□□ -0.78
USP54-207ENST00000451492 SFMBT1Q9UHJ3 866 aa10.16□□□□□ -0.78
USP54-207ENST00000451492 USP3Q9Y6I4 520 aa10.16□□□□□ -0.78
USP54-207ENST00000451492 LAMA1P25391 3075 aa10.16□□□□□ -0.78
USP54-207ENST00000451492 ZNF292O60281 2723 aa10.16□□□□□ -0.78
USP54-207ENST00000451492 NYNRINQ9P2P1 1898 aaKnown RBP10.15□□□□□ -0.78
USP54-207ENST00000451492 TNRC6BQ9UPQ9 1833 aaKnown RBP10.15□□□□□ -0.78
USP54-207ENST00000451492 MYO18AQ92614 2054 aaKnown RBP10.15□□□□□ -0.78
USP54-207ENST00000451492 FAM170AA1A519 330 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 TBC1D3BA6NDS4 549 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.15□□□□□ -0.78
USP54-207ENST00000451492 PES1O00541 588 aaKnown RBP10.15□□□□□ -0.78
USP54-207ENST00000451492 DCLK1O15075 740 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 AXIN1O15169 862 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 P4HA2O15460 535 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 MSI1O43347 362 aaKnown RBP10.15□□□□□ -0.78
USP54-207ENST00000451492 GREM1O60565 184 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 TULP3O75386 442 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 APBB3O95704 486 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 PAEPP09466 180 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 SETSIPP0DME0 302 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 GBP1P32455 592 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 PLA2G4AP47712 749 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 ID4P47928 161 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 MARSP56192 900 aaKnown RBP10.15□□□□□ -0.78
USP54-207ENST00000451492 DPCR1Q3MIW9 517 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 RAB41Q5JT25 222 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 GRAMD4Q6IC98 578 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 TOGARAM2Q6ZUX3 1019 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 SYT13Q7L8C5 426 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 KBTBD6Q86V97 674 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 DENND1CQ8IV53 801 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 ARHGAP18Q8N392 663 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 FAM160A2Q8N612 972 aaPredicted RBP10.15□□□□□ -0.78
USP54-207ENST00000451492 ZNF513Q8N8E2 541 aaPredicted RBP10.15□□□□□ -0.78
USP54-207ENST00000451492 KREMEN1Q96MU8 473 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 MED15Q96RN5 788 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 ZSWIM1Q9BR11 485 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 MIS12Q9H081 205 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 PARD6AQ9NPB6 346 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 UBE2TQ9NPD8 197 aaPredicted RBP10.15□□□□□ -0.78
USP54-207ENST00000451492 ST7Q9NRC1 585 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 MARCH2Q9P0N8 246 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 BCCIPQ9P287 314 aaKnown RBP eCLIP10.15□□□□□ -0.78
USP54-207ENST00000451492 DEC1Q9P2X7 70 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 STRIP2Q9ULQ0 834 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 MMP17Q9ULZ9 603 aa10.15□□□□□ -0.78
USP54-207ENST00000451492 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.15□□□□□ -0.78
USP54-207ENST00000451492 PLXND1Q9Y4D7 1925 aa10.15□□□□□ -0.79
USP54-207ENST00000451492 FAM186AA6NE01 2351 aa10.15□□□□□ -0.79
USP54-207ENST00000451492 DNAH14Q0VDD8 3507 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 YJEFN3A6XGL0 299 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 E7ENQ6 273 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 SGK1O00141 431 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 HOXC11O43248 304 aaPredicted RBP10.14□□□□□ -0.79
USP54-207ENST00000451492 THAP12O43422 761 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 LETM1O95202 739 aaPredicted RBP10.14□□□□□ -0.79
USP54-207ENST00000451492 HNRNPLP14866 589 aaKnown RBP eCLIP10.14□□□□□ -0.793e-8■■■■□ 26.7
USP54-207ENST00000451492 SLC9A1P19634 815 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 EIF2DP41214 584 aaKnown RBP10.14□□□□□ -0.79
USP54-207ENST00000451492 GRIA2P42262 883 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 DGKGP49619 791 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 GCNT1Q02742 428 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 PMF1Q6P1K2 205 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 TRIM65Q6PJ69 517 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 TMEM92Q6UXU6 159 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 HTR3DQ70Z44 454 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 BHLHA9Q7RTU4 235 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 FMNL3Q8IVF7 1028 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 ETFBKMTQ8IXQ9 262 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 PGBD3Q8N328 593 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 PHTF2Q8N3S3 785 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 TERB1Q8NA31 727 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 IL17RCQ8NAC3 791 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 MDGA1Q8NFP4 955 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 RNF139Q8WU17 664 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 HMGB4Q8WW32 186 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 GAB3Q8WWW8 586 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 RMDN1Q96DB5 314 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 XPO6Q96QU8 1125 aaKnown RBP10.14□□□□□ -0.79
USP54-207ENST00000451492 CDK5RAP1Q96SZ6 601 aaKnown RBP10.14□□□□□ -0.79
USP54-207ENST00000451492 SMOC1Q9H4F8 434 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 FAM124BQ9H5Z6 455 aaPredicted RBP10.14□□□□□ -0.79
USP54-207ENST00000451492 ACP6Q9NPH0 428 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 CLIC5Q9NZA1 410 aa10.14□□□□□ -0.79
USP54-207ENST00000451492 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.14□□□□□ -0.79
USP54-207ENST00000451492 ADAMTS9Q9P2N4 1935 aa10.13□□□□□ -0.79
USP54-207ENST00000451492 TCRBV21S2A2A0A5A6 115 aa10.13□□□□□ -0.79
USP54-207ENST00000451492 PMM2O15305 246 aa10.13□□□□□ -0.79
USP54-207ENST00000451492 TSPAN3O60637 253 aa10.13□□□□□ -0.79
USP54-207ENST00000451492 KLKB1P03952 638 aa10.13□□□□□ -0.79
USP54-207ENST00000451492 PNMA6AP0CW24 399 aaPredicted RBP10.13□□□□□ -0.79
USP54-207ENST00000451492 PRKCSHP14314 528 aaPredicted RBP10.13□□□□□ -0.79
USP54-207ENST00000451492 GNA15P30679 374 aa10.13□□□□□ -0.79
USP54-207ENST00000451492 CNR2P34972 360 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms