RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TMEM25Q86YD3 366 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 SYT12Q8IV01 421 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 BBS7Q8IWZ6 715 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 HOMEZQ8IX15 550 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 ETFBKMTQ8IXQ9 262 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 C12orf29Q8N999 325 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 TERB1Q8NA31 727 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 MDGA1Q8NFP4 955 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 OLIG1Q8TAK6 271 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 TMEM176AQ96HP8 235 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 ZFRQ96KR1 1074 aaKnown RBP7.45□□□□□ -1.22
VPS41-208ENST00000448833 EDEM2Q9BV94 578 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 BBS2Q9BXC9 721 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 KLF16Q9BXK1 252 aaPredicted RBP7.45□□□□□ -1.22
VPS41-208ENST00000448833 TPSD1Q9BZJ3 242 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 SDCBP2Q9H190 292 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 TMEM9BQ9NQ34 198 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 OLA1Q9NTK5 396 aaKnown RBP7.45□□□□□ -1.22
VPS41-208ENST00000448833 FAM49BQ9NUQ9 324 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 RAB20Q9NX57 234 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 MARK1Q9P0L2 795 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 EVLQ9UI08 416 aaPredicted RBP7.45□□□□□ -1.22
VPS41-208ENST00000448833 NAGPAQ9UK23 515 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 ANGPTL2Q9UKU9 493 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 STRIP2Q9ULQ0 834 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 BOLA1Q9Y3E2 137 aa7.45□□□□□ -1.22
VPS41-208ENST00000448833 NEDD8-MDP1E9PL57 170 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 SGK1O00141 431 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 DCLK1O15075 740 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 TIMM44O43615 452 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 CILPO75339 1184 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 BEST1O76090 585 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 CEACAM1P13688 526 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 HOXB2P14652 356 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 TYRP14679 529 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 CD58P19256 250 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 DHPSP49366 369 aaPredicted RBP7.44□□□□□ -1.22
VPS41-208ENST00000448833 DGKGP49619 791 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 MXI1P50539 228 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 ZNF445P59923 1031 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 SHC2P98077 582 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 LRRC63Q05C16 580 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 KDSRQ06136 332 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 CETN1Q12798 172 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 STARD3Q14849 445 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 CCDC6Q16204 474 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 COBLL1Q53SF7 1204 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 C10orf76Q5T2E6 689 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 SYCP2LQ5T4T6 812 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 ZNF658Q5TYW1 1059 aaPredicted RBP7.44□□□□□ -1.22
VPS41-208ENST00000448833 NAIF1Q69YI7 327 aaPredicted RBP7.44□□□□□ -1.22
VPS41-208ENST00000448833 SPOPLQ6IQ16 392 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 TMEM92Q6UXU6 159 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 RSRC2Q7L4I2 434 aaKnown RBP7.44□□□□□ -1.22
VPS41-208ENST00000448833 CHPFQ8IZ52 775 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 PHTF2Q8N3S3 785 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 NAT16Q8N8M0 369 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 ANKRD52Q8NB46 1076 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 ZMIZ2Q8NF64 920 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 TAS1R2Q8TE23 839 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 UCMAQ8WVF2 138 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 HMGB4Q8WW32 186 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 PIGKQ92643 395 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 SLC2A11Q9BYW1 496 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 IRX2Q9BZI1 471 aaPredicted RBP7.44□□□□□ -1.22
VPS41-208ENST00000448833 SLC32A1Q9H598 525 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 METTL14Q9HCE5 456 aaKnown RBP7.44□□□□□ -1.22
VPS41-208ENST00000448833 CISHQ9NSE2 258 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 DNAJC17Q9NVM6 304 aaKnown RBP7.44□□□□□ -1.22
VPS41-208ENST00000448833 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.44□□□□□ -1.22
VPS41-208ENST00000448833 HESX1Q9UBX0 185 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 MAPK8IP1Q9UQF2 711 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 USP3Q9Y6I4 520 aa7.44□□□□□ -1.22
VPS41-208ENST00000448833 CNOT1A5YKK6 2376 aaKnown RBP7.44□□□□□ -1.22
VPS41-208ENST00000448833 TCRBV21S2A2A0A5A6 115 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 LNP1A1A4G5 178 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 HHLA1C9JL84 531 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 PSMA7O14818 248 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 SLC16A3O15427 465 aaKnown RBP7.43□□□□□ -1.22
VPS41-208ENST00000448833 NDUFS2O75306 463 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 KCNK5O95279 499 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 SYPP08247 313 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 TRIM49P0CI25 452 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 TRIM49CP0CI26 452 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 IRF1P10914 325 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 HNRNPLP14866 589 aaKnown RBP eCLIP7.43□□□□□ -1.226e-15■■■■■ 32.5
VPS41-208ENST00000448833 GNSP15586 552 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 CSRP1P21291 193 aaKnown RBP7.43□□□□□ -1.22
VPS41-208ENST00000448833 TBXAS1P24557 533 aaPredicted RBP7.43□□□□□ -1.22
VPS41-208ENST00000448833 HARS2P49590 506 aaKnown RBP7.43□□□□□ -1.22
VPS41-208ENST00000448833 ATXN3P54252 364 aaPredicted RBP7.43□□□□□ -1.22
VPS41-208ENST00000448833 NUCB2P80303 420 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 PPP3CAQ08209 521 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 HNRNPDQ14103 355 aaKnown RBP7.43□□□□□ -1.22
VPS41-208ENST00000448833 EIF4HQ15056 248 aaKnown RBP7.43□□□□□ -1.22
VPS41-208ENST00000448833 DUOXA1Q1HG43 343 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 ZCWPW2Q504Y3 356 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 C1orf220Q5T0J3 134 aa7.43□□□□□ -1.22
VPS41-208ENST00000448833 PPP1R26Q5T8A7 1209 aaPredicted RBP7.43□□□□□ -1.22
VPS41-208ENST00000448833 EMC10Q5UCC4 262 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms