RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 NECTIN3Q9NQS3 549 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 TBC1D14Q9P2M4 693 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 SNAP91O60641 907 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 ANXA9O76027 345 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 NR1D2Q14995 579 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 UBE3CQ15386 1083 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 MRPL50Q8N5N7 158 aaKnown RBP9.18□□□□□ -0.94
NIPBL-202ENST00000448238 ACTRT2Q8TDY3 377 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 THRSPQ92748 146 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 RNF25Q96BH1 459 aaPredicted RBP9.18□□□□□ -0.94
NIPBL-202ENST00000448238 ATXN3LQ9H3M9 355 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 DDX18Q9NVP1 670 aaKnown RBP9.18□□□□□ -0.94
NIPBL-202ENST00000448238 LRRC9Q6ZRR7 1453 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 BLMP54132 1417 aaPredicted RBP9.18□□□□□ -0.94
NIPBL-202ENST00000448238 FOXO3O43524 673 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 NUDT14O95848 222 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 TOP3BO95985 862 aaKnown RBP9.18□□□□□ -0.94
NIPBL-202ENST00000448238 IFNA16P05015 189 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 OSTNP61366 133 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 GALNTL6Q49A17 601 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 SLFN13Q68D06 897 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 MSL3Q8N5Y2 521 aaKnown RBP9.18□□□□□ -0.94
NIPBL-202ENST00000448238 PLGRKTQ9HBL7 147 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 TIMMDC1Q9NPL8 285 aa9.18□□□□□ -0.94
NIPBL-202ENST00000448238 PTGES3LE9PB15 166 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 O00370 1275 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 METTL18O95568 372 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 UMPSP11172 480 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 HNRNPH1P31943 449 aaKnown RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 HPCAL1P37235 193 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 PTPN9P43378 593 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 GSSP48637 474 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 BRINP3Q76B58 766 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 OSCARQ8IYS5 282 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 RIN2Q8WYP3 895 aaPredicted RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 REPS1Q96D71 796 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 EMILIN2Q9BXX0 1053 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 MTIF3Q9H2K0 278 aaKnown RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 REEP1Q9H902 201 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 CRLS1Q9UJA2 301 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 MRPS7Q9Y2R9 242 aaKnown RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 EHBP1L1Q8N3D4 1523 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 CYP17A1P05093 508 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 CYP27A1Q02318 531 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 ENPEPQ07075 957 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 CHI3L2Q15782 390 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 NECAB2Q7Z6G3 386 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 THAP5Q7Z6K1 395 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 SRBD1Q8N5C6 995 aaKnown RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 KYQ8NBH2 561 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 PLBD2Q8NHP8 589 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 DLG3Q92796 817 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 RNPC3Q96LT9 517 aaKnown RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 CCSER1Q9C0I3 900 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 EVA1BQ9NVM1 165 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 RDH8Q9NYR8 311 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 PYCARDQ9ULZ3 195 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 SLC12A4Q9UP95 1085 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 SH3D21A4FU49 640 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 VPS4BO75351 444 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 NQO1P15559 274 aaKnown RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 H2AFXP16104 143 aaPredicted RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 TFE3P19532 575 aaPredicted RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 FGFR4P22455 802 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 TARSP26639 723 aaKnown RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 RBM34P42696 430 aaKnown RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 CLK3P49761 638 aaKnown RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 POLD3Q15054 466 aaPredicted RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 ALG10Q5BKT4 473 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 FAR1Q8WVX9 515 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 USP7Q93009 1102 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 TMEM68Q96MH6 324 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 LRRC4BQ9NT99 713 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 MAN1B1Q9UKM7 699 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 CDH9Q9ULB4 789 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 WDR97A6NE52 1622 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 DNAJC13O75165 2243 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 DGKIO75912 1065 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 FTLP02792 175 aaPredicted RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 MTHFD1P11586 935 aaKnown RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 ERFP50548 548 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 ARFIP1P53367 373 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 PRKAA2P54646 552 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 EAPPQ56P03 285 aaPredicted RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 TBCELQ5QJ74 424 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 AAGABQ6PD74 315 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 ZNF613Q6PF04 617 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 DHRSXQ8N5I4 330 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 B3GALNT2Q8NCR0 500 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 SPPL2AQ8TCT8 520 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 EXOC2Q96KP1 924 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 ATP10DQ9P241 1426 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 HECW1Q76N89 1606 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 WASLO00401 505 aaPredicted RBP9.17□□□□□ -0.94
NIPBL-202ENST00000448238 RIPK1Q13546 671 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 TCEA2Q15560 299 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 SLC25A25Q6KCM7 469 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 STRA8Q7Z7C7 330 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 ZNF567Q8N184 647 aa9.17□□□□□ -0.94
NIPBL-202ENST00000448238 ALG13Q9NP73 1137 aaKnown RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms