RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 FAM90A1Q86YD7 464 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 RNF168Q8IYW5 571 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 SYCP3Q8IZU3 236 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ZGPATQ8N5A5 531 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ZBTB44Q8NCP5 570 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 OR7D4Q8NG98 312 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PRPF31Q8WWY3 499 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 SEC14L1Q92503 715 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 UTP14AQ9BVJ6 771 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 SLC5A7Q9GZV3 580 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 C11orf54Q9H0W9 315 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 STN1Q9H668 368 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 LIN28AQ9H9Z2 209 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PPP1R14DQ9NXH3 145 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 KCND2Q9NZV8 630 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF281Q9Y2X9 895 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PTRH2Q9Y3E5 179 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 KDM6BO15054 1643 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 KRTAP9-6A0A140TA67 174 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ACOT7O00154 380 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PCDH17O14917 1159 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 TEX33O43247 280 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 CUTAO60888 179 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 MPOP05164 745 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 EIF2S1P05198 315 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PRKCIP41743 596 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF135P52742 658 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 CAPZA1P52907 286 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 EPHB3P54753 998 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 CTXN1P60606 82 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 MEF2AQ02078 507 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 DBPQ10586 325 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 BOP1Q14137 746 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 NFIXQ14938 502 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 MORF4L2Q15014 288 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 GALNTL6Q49A17 601 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 CYP27C1Q4G0S4 372 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 NHSL2Q5HYW2 709 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ANKRD40Q6AI12 368 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 DGAT2L7PQ6IED9 249 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 LRSAM1Q6UWE0 723 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 LAYNQ6UX15 382 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ZDHHC24Q6UX98 284 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 C20orf204Q6ZNR8 217 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 OTOP2Q7RTS6 562 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 GSTA5Q7RTV2 222 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 GPRIN1Q7Z2K8 1008 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 KRT27Q7Z3Y8 459 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 DTWD1Q8N5C7 304 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 FAM46DQ8NEK8 389 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 NUP43Q8NFH3 380 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 SNX33Q8WV41 574 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 RSC1A1Q92681 617 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ANP32BQ92688 251 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PRCCQ92733 491 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 CPEB1Q9BZB8 566 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 SIK2Q9H0K1 926 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 GSX1Q9H4S2 264 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 SLC32A1Q9H598 525 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 C17orf75Q9HAS0 396 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PLEKHA2Q9HB19 425 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ABCB8Q9NUT2 735 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 TMLHEQ9NVH6 421 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 MOCS1Q9NZB8 636 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 XPR1Q9UBH6 696 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 TSPYL4Q9UJ04 414 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 NUDT5Q9UKK9 219 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ANGEL1Q9UNK9 670 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 USP22Q9UPT9 525 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 SIT1Q9Y3P8 196 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ATP6V0A2Q9Y487 856 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 CCL27Q9Y4X3 112 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 CAPN6Q9Y6Q1 641 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 A8MXE2 369 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 RIPK2O43353 540 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 SEC22BO75396 215 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 SEC14L2O76054 403 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 TOP1P11387 765 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 IL2RBP14784 551 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 MST1P26927 711 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ARL1P40616 181 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 SULT1E1P49888 294 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 BMXP51813 675 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 MFAP4P55083 255 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 TEFQ10587 303 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 LRRC24Q50LG9 513 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 PLA1AQ53H76 456 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 SGO2Q562F6 1265 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 DCAF17Q5H9S7 520 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 IRGCQ6NXR0 463 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 TAF2Q6P1X5 1199 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ABHD15Q6UXT9 468 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 KIAA0408Q6ZU52 694 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 USP51Q70EK9 711 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ZER1Q7Z7L7 766 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 VSIG10LQ86VR7 867 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 ZFPM1Q8IX07 1006 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 Q8N1Y9 231 aa2.47□□□□□ -2.01
CCDC88A-208ENST00000444458 TDRD5Q8NAT2 981 aaKnown RBP2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms