RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 HMGA2P52926 109 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 DEUP1Q05D60 604 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 LMAN2Q12907 356 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 MTAPQ13126 283 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 P3H1Q32P28 736 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 TMEM196Q5HYL7 178 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 ZNF362Q5T0B9 420 aaPredicted RBP4.82□□□□□ -1.64
USP40-204ENST00000427947 GRHL2Q6ISB3 625 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 ERAP2Q6P179 960 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 CEP85Q6P2H3 762 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 KIRREL2Q6UWL6 708 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 TTC30AQ86WT1 665 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 LTV1Q96GA3 475 aaPredicted RBP4.82□□□□□ -1.64
USP40-204ENST00000427947 BBC3Q96PG8 261 aaPredicted RBP4.82□□□□□ -1.64
USP40-204ENST00000427947 MMS19Q96T76 1030 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 RMDN3Q96TC7 470 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 TIMP4Q99727 224 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 KRTAP4-7Q9BYR0 210 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 CIPCQ9C0C6 399 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 TMEM8AQ9HCN3 771 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 DACT1Q9NYF0 836 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 ADAM21Q9UKJ8 722 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 ASAP1Q9ULH1 1129 aa4.82□□□□□ -1.64
USP40-204ENST00000427947 PNMA6EA0A0J9YXQ4 647 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 SYT5O00445 386 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 IFRD1O00458 451 aaPredicted RBP4.81□□□□□ -1.64
USP40-204ENST00000427947 ACKR2O00590 384 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 NBNO60934 754 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 WT1P19544 449 aaPredicted RBP4.81□□□□□ -1.64
USP40-204ENST00000427947 ADRA1DP25100 572 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 ALDH18A1P54886 795 aaKnown RBP4.81□□□□□ -1.64
USP40-204ENST00000427947 SOX10P56693 466 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 BFSP2Q13515 415 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 PTK2BQ14289 1009 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 RNASE12Q5GAN4 147 aaKnown RBP4.81□□□□□ -1.64
USP40-204ENST00000427947 TLDC1Q6P9B6 456 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 SFTPA1Q8IWL2 248 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 TERB1Q8NA31 727 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 MORC4Q8TE76 937 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 SARAFQ96BY9 339 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 EIF3CQ99613 913 aaKnown RBP4.81□□□□□ -1.64
USP40-204ENST00000427947 NUDT22Q9BRQ3 303 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 THAP7Q9BT49 309 aaPredicted RBP4.81□□□□□ -1.64
USP40-204ENST00000427947 RIOX1Q9H6W3 641 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 FSCN3Q9NQT6 498 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 SH3BP4Q9P0V3 963 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 SCAF8Q9UPN6 1271 aaKnown RBP4.81□□□□□ -1.64
USP40-204ENST00000427947 WNT6Q9Y6F9 365 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 PKD1L2Q7Z442 2459 aa4.81□□□□□ -1.64
USP40-204ENST00000427947 FCHO1O14526 889 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 SUV39H1O43463 412 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 NTSR2O95665 410 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 NUDT3O95989 172 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 ITGA5P08648 1049 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 ZNF37AP17032 561 aaPredicted RBP4.8□□□□□ -1.64
USP40-204ENST00000427947 BMP5P22003 454 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 KLRK1P26718 216 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 AKT1P31749 480 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 SERPINF1P36955 418 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 GSTM5P46439 218 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 DGKQP52824 942 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 TXNL4AP83876 142 aaKnown RBP4.8□□□□□ -1.64
USP40-204ENST00000427947 CSHL1Q14406 222 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 GRM4Q14833 912 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 PDCD2Q16342 344 aaPredicted RBP4.8□□□□□ -1.64
USP40-204ENST00000427947 AASDHQ4L235 1098 aaPredicted RBP4.8□□□□□ -1.64
USP40-204ENST00000427947 STRIP1Q5VSL9 837 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 ANO1Q5XXA6 986 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 RINT1Q6NUQ1 792 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.8□□□□□ -1.64
USP40-204ENST00000427947 PNPLA1Q8N8W4 532 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 DAZAP1Q96EP5 407 aaKnown RBP4.8□□□□□ -1.64
USP40-204ENST00000427947 KATNAL1Q9BW62 490 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 PPCSQ9HAB8 311 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 SEMA4GQ9NTN9 838 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 TFCP2L1Q9NZI6 479 aa4.8□□□□□ -1.64
USP40-204ENST00000427947 ARID4BQ4LE39 1312 aaPredicted RBP4.79□□□□□ -1.64
USP40-204ENST00000427947 hCG_1642624A0A1W2PR95 340 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 TARM1B6A8C7 271 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 DHHO43323 396 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 DNPH1O43598 174 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 TAF5LO75529 589 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 JTBO76095 146 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 ANXA6P08133 673 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 RENBPP51606 427 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 COPB1P53618 953 aaKnown RBP4.79□□□□□ -1.64
USP40-204ENST00000427947 TRIM72Q6ZMU5 477 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 PIK3AP1Q6ZUJ8 805 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 KRT27Q7Z3Y8 459 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 CACNA2D3Q8IZS8 1091 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 CLASRPQ8N2M8 674 aaKnown RBP4.79□□□□□ -1.64
USP40-204ENST00000427947 MYCT1Q8N699 235 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 BOLLQ8N9W6 283 aaKnown RBP4.79□□□□□ -1.64
USP40-204ENST00000427947 REPS1Q96D71 796 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 PRR11Q96HE9 360 aaPredicted RBP4.79□□□□□ -1.64
USP40-204ENST00000427947 HS6ST2Q96MM7 605 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 SNX18Q96RF0 628 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 CINPQ9BW66 212 aaPredicted RBP4.79□□□□□ -1.64
USP40-204ENST00000427947 KRTAP4-9Q9BYQ8 210 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 PRDM13Q9H4Q3 707 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms