RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 TMEM120AQ9BXJ8 343 aa14.84□□□□□ -0.03
LIG1-202ENST00000427526 FRMD8Q9BZ67 464 aaPredicted RBP14.84□□□□□ -0.03
LIG1-202ENST00000427526 PRMT7Q9NVM4 692 aaPredicted RBP14.84□□□□□ -0.03
LIG1-202ENST00000427526 EVPLQ92817 2033 aa14.83□□□□□ -0.03
LIG1-202ENST00000427526 CFAP69A5D8W1 941 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 E5RJQ4 531 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 PRPSAP2O60256 369 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 HAUS5O94927 633 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 SERPINB3P29508 390 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 MAGEA6P43360 314 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 SERPINB4P48594 390 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 SLC10A6Q3KNW5 377 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 CCDC14Q49A88 953 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 DUSP28Q4G0W2 176 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 TTC39BQ5VTQ0 682 aaPredicted RBP14.83□□□□□ -0.04
LIG1-202ENST00000427526 MTHFD1LQ6UB35 978 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 TTC17Q96AE7 1141 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 PRR11Q96HE9 360 aaPredicted RBP14.83□□□□□ -0.04
LIG1-202ENST00000427526 NAF1Q96HR8 494 aaKnown RBP14.83□□□□□ -0.04
LIG1-202ENST00000427526 ASB7Q9H672 318 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 POPDC2Q9HBU9 364 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 ZNF180Q9UJW8 692 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 BARX2Q9UMQ3 279 aaPredicted RBP14.83□□□□□ -0.04
LIG1-202ENST00000427526 CXorf49A8MYA2 514 aaPredicted RBP14.83□□□□□ -0.04
LIG1-202ENST00000427526 PIK3R2O00459 728 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 MCF2P10911 925 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 PRKCHP24723 683 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 PHKA2P46019 1235 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 NDST1P52848 882 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 PDK2Q15119 407 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 HPDLQ96IR7 371 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 NSL1Q96IY1 281 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 FBXO6Q9NRD1 293 aaPredicted RBP14.83□□□□□ -0.04
LIG1-202ENST00000427526 PLXNB2O15031 1838 aa14.83□□□□□ -0.04
LIG1-202ENST00000427526 GSC2O15499 205 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 KCNN4O15554 427 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 RBL1P28749 1068 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 POU5F1BQ06416 359 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 TAF11Q15544 211 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 MARCH8Q5T0T0 291 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 SLC9A4Q6AI14 798 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 OR6B2Q6IFH4 312 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 RFWD3Q6PCD5 774 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.82□□□□□ -0.04
LIG1-202ENST00000427526 OR6J1Q8NGC5 347 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 SRPK1Q96SB4 655 aaKnown RBP14.82□□□□□ -0.04
LIG1-202ENST00000427526 PLXNA1Q9UIW2 1896 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 BCLAF3A2AJT9 711 aaKnown RBP14.82□□□□□ -0.04
LIG1-202ENST00000427526 TRDMT1O14717 391 aaKnown RBP14.82□□□□□ -0.04
LIG1-202ENST00000427526 MMP3P08254 477 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 P4HA1P13674 534 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 TGM2P21980 687 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 ABL2P42684 1182 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 KRT72Q14CN4 511 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 CDO1Q16878 200 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 BOLA3Q53S33 107 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 MAP7D3Q8IWC1 876 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.82□□□□□ -0.04
LIG1-202ENST00000427526 PCDH19Q8TAB3 1148 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 USP6NLQ92738 828 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 ABHD16BQ9H3Z7 469 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 PDZD7Q9H5P4 517 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 DCLRE1BQ9H816 532 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 TSPAN16Q9UKR8 245 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 TRIM49D1C9J1S8 452 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 GRAP2O75791 330 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 HUNKP57058 714 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 TNFAIP2Q03169 654 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 KHDC1Q4VXA5 237 aaKnown RBP14.82□□□□□ -0.04
LIG1-202ENST00000427526 FAM91A1Q658Y4 838 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 NAIF1Q69YI7 327 aaPredicted RBP14.82□□□□□ -0.04
LIG1-202ENST00000427526 DPH6Q7L8W6 267 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.82□□□□□ -0.04
LIG1-202ENST00000427526 TEKT4Q8WW24 435 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 KHSRPQ92945 711 aaKnown RBP eCLIP14.82□□□□□ -0.04
LIG1-202ENST00000427526 ITFG2Q969R8 447 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 CFAP36Q96G28 342 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 ZC3H7BQ9UGR2 993 aaKnown RBP14.82□□□□□ -0.04
LIG1-202ENST00000427526 KIAA1257Q9ULG3 409 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 PLLPQ9Y342 182 aa14.82□□□□□ -0.04
LIG1-202ENST00000427526 DPYSL4O14531 572 aa14.81□□□□□ -0.04
LIG1-202ENST00000427526 COPEO14579 308 aa14.81□□□□□ -0.04
LIG1-202ENST00000427526 LIN7AO14910 233 aaPredicted RBP14.81□□□□□ -0.04
LIG1-202ENST00000427526 RFPL1O75677 317 aa14.81□□□□□ -0.04
LIG1-202ENST00000427526 SNRPAP09012 282 aaKnown RBP14.81□□□□□ -0.04
LIG1-202ENST00000427526 ARF4P18085 180 aaPredicted RBP14.81□□□□□ -0.04
LIG1-202ENST00000427526 CDC25CP30307 473 aa14.81□□□□□ -0.04
LIG1-202ENST00000427526 PTDSS1P48651 473 aaKnown RBP14.81□□□□□ -0.04
LIG1-202ENST00000427526 MRPS5P82675 430 aaKnown RBP14.81□□□□□ -0.04
LIG1-202ENST00000427526 BLMHQ13867 455 aa14.81□□□□□ -0.04
LIG1-202ENST00000427526 KRT81Q14533 505 aa14.81□□□□□ -0.04
LIG1-202ENST00000427526 GRIK4Q16099 956 aa14.81□□□□□ -0.04
LIG1-202ENST00000427526 CMPK2Q5EBM0 449 aa14.81□□□□□ -0.04
LIG1-202ENST00000427526 DSTYKQ6XUX3 929 aa14.81□□□□□ -0.04
LIG1-202ENST00000427526 PPM1NQ8N819 430 aa14.81□□□□□ -0.04
LIG1-202ENST00000427526 NLRP7Q8WX94 980 aa14.81□□□□□ -0.04
LIG1-202ENST00000427526 FAM124BQ9H5Z6 455 aaPredicted RBP14.81□□□□□ -0.04
LIG1-202ENST00000427526 PCDH18Q9HCL0 1135 aa14.81□□□□□ -0.04
LIG1-202ENST00000427526 SMYD2Q9NRG4 433 aa14.81□□□□□ -0.04
LIG1-202ENST00000427526 SETD4Q9NVD3 440 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms