RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 MDH1BQ5I0G3 518 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 TAF2Q6P1X5 1199 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 CASP12Q6UXS9 341 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 NLRP14Q86W24 1093 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 ERO1BQ86YB8 467 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 ZNF669Q96BR6 464 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 ROPN1BQ9BZX4 212 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 POLR1BQ9H9Y6 1135 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 ROPN1Q9HAT0 212 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 INTS7Q9NVH2 962 aaKnown RBP7.06□□□□□ -1.28
SCN1A-204ENST00000423058 SNX6Q9UNH7 406 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 SH3GLB1Q9Y371 365 aa7.06□□□□□ -1.28
SCN1A-204ENST00000423058 AP3D1O14617 1153 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 KATNA1O75449 491 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 HLA-DQA2P01906 255 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 VAV1P15498 845 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 NAMPTP43490 491 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 CSNK2BP67870 215 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 ZNF543Q08ER8 600 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 XRCC4Q13426 336 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 PABPC1LQ4VXU2 614 aaKnown RBP7.05□□□□□ -1.28
SCN1A-204ENST00000423058 PAGE2BQ5JRK9 111 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 MIIPQ5JXC2 388 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 PRMT9Q6P2P2 845 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 BTN2A1Q7KYR7 527 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 APBB2Q92870 758 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 GPRASP2Q96D09 838 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 KCNS3Q9BQ31 491 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 ING3Q9NXR8 418 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 SDR42E2A6NKP2 422 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 AVILO75366 819 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 IGSF6O95976 241 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 ITGA1P56199 1179 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 ACTN3Q08043 901 aaPredicted RBP7.05□□□□□ -1.28
SCN1A-204ENST00000423058 GRIK3Q13003 919 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 USP45Q70EL2 814 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 PANX3Q96QZ0 392 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 PRRG4Q9BZD6 226 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 EPB41L4BQ9H329 900 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 UBA2Q9UBT2 640 aaPredicted RBP7.05□□□□□ -1.28
SCN1A-204ENST00000423058 NMT2O60551 498 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 MSCO60682 206 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 TPBGLP0DKB5 382 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 AMD1P17707 334 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 YY1P25490 414 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 SERPINH1P50454 418 aaKnown RBP7.05□□□□□ -1.28
SCN1A-204ENST00000423058 FAM220AQ7Z4H9 259 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 GAS2L3Q86XJ1 694 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 CGRRF1Q99675 332 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 C7orf25Q9BPX7 421 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 MANSC1Q9H8J5 431 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 TMCO1Q9UM00 188 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 PNPLA7Q6ZV29 1317 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 B2RBV5 119 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 RBAK-RBAKDNI3L0D1 243 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 HLA-DRAP01903 254 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 KRT6AP02538 564 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 KRT6BP04259 564 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 KRT6CP48668 564 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 CLCN6P51797 869 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 NDUFA5Q16718 116 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 CCDC149Q6ZUS6 474 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 KRT73Q86Y46 540 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 SLC44A5Q8NCS7 719 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 UBE2E3Q969T4 207 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 PPP1R10Q96QC0 940 aaKnown RBP7.05□□□□□ -1.28
SCN1A-204ENST00000423058 PDCD10Q9BUL8 212 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 SLC39A8Q9C0K1 460 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 DEFB129Q9H1M3 183 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 DNPEPQ9ULA0 475 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.05□□□□□ -1.28
SCN1A-204ENST00000423058 GLI2P10070 1586 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 PQBP1O60828 265 aaKnown RBP7.05□□□□□ -1.28
SCN1A-204ENST00000423058 DTNBO60941 627 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 UMPSP11172 480 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 GRK2P25098 689 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 COPAP53621 1224 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 FUT11Q495W5 492 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 PDZK1Q5T2W1 519 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 TRIQKQ629K1 86 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 RPTNQ6XPR3 784 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 UBA3Q8TBC4 463 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 SMAD5Q99717 465 aaKnown RBP7.05□□□□□ -1.28
SCN1A-204ENST00000423058 OSBPL8Q9BZF1 889 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 DDX47Q9H0S4 455 aaKnown RBP7.05□□□□□ -1.28
SCN1A-204ENST00000423058 SGTAO43765 313 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 DLGAP3O95886 979 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 HOXC12P31275 282 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 SPIDRQ14159 915 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 BTG3Q14201 252 aaPredicted RBP7.05□□□□□ -1.28
SCN1A-204ENST00000423058 LRIG3Q6UXM1 1119 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 RD3Q7Z3Z2 195 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 GATAD2AQ86YP4 633 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 TMEM199Q8N511 208 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 CCSER1Q9C0I3 900 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 IGFLR1Q9H665 355 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 TBX20Q9UMR3 447 aa7.05□□□□□ -1.28
SCN1A-204ENST00000423058 PIPSLA2A3N6 862 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 TDP2O95551 362 aa7.04□□□□□ -1.28
SCN1A-204ENST00000423058 PIK3CGP48736 1102 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms