RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 VRK1Q99986 396 aaPredicted RBP4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 LRFN3Q9BTN0 628 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 KRT23Q9C075 422 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 COA1Q9GZY4 146 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 RNF41Q9H4P4 317 aaPredicted RBP4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 SLAMF7Q9NQ25 335 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 MAN1C1Q9NR34 630 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 ASB6Q9NWX5 421 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 AATFQ9NY61 560 aaKnown RBP eCLIP4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 FOXJ2Q9P0K8 574 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 ARPP21Q9UBL0 812 aaPredicted RBP4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 SERPINB13Q9UIV8 391 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 KIF3AQ9Y496 699 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 PCDHB1Q9Y5F3 818 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 MROH7-TTC4A0A0A0MT08 1334 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 FER1L6Q2WGJ9 1857 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 SCN9AQ15858 1988 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 A0A0G2JLW4 131 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 A0A1W2PS29 197 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 ERICH2A1L162 156 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 VPS37CA5D8V6 355 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 PRC1O43663 620 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 LARGE1O95461 756 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 C1RP00736 705 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 IGLV2-14P01704 120 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 FGAP02671 866 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 CHRM2P08172 466 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 IL1R1P14778 569 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 FBLP22087 321 aaKnown RBP4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 LMO1P25800 156 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 FOLR3P41439 243 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 IL12RB1P42701 662 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 CACNA2D1P54289 1103 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 PSMC1P62191 440 aaKnown RBP4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 DYNLL1P63167 89 aaKnown RBP4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 AMPD3Q01432 767 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 MC2RQ01718 297 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 STK3Q13188 491 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 ALX1Q15699 326 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 KHDC1Q4VXA5 237 aaKnown RBP4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 ZNF362Q5T0B9 420 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 KAZNQ674X7 775 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 TAPT1Q6NXT6 567 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 MFSD6Q6ZSS7 791 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 STOX1Q6ZVD7 989 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 ADGRA1Q86SQ6 560 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 TTC7BQ86TV6 843 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 TBC1D10CQ8IV04 446 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 CFAP52Q8N1V2 620 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 Q8NA96 180 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 FAM184AQ8NB25 1140 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 PDPRQ8NCN5 879 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 SDR42E1Q8WUS8 393 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 SNX19Q92543 992 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 NSUN4Q96CB9 384 aaKnown RBP4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 MRGPRX4Q96LA9 322 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 LRRC2Q9BYS8 371 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 ALDH8A1Q9H2A2 487 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 KLK15Q9H2R5 256 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 ATP8A2Q9NTI2 1148 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 VSX1Q9NZR4 365 aaPredicted RBP4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 CALCOCO1Q9P1Z2 691 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 SLC17A6Q9P2U8 582 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 POLLQ9UGP5 575 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 TPCN1Q9ULQ1 816 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 NEDD4P46934 1319 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 WDR19Q8NEZ3 1342 aa4.35□□□□□ -1.71
HMGB3P20-201ENST00000417997 KLF18A0A0U1RQI7 1052 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 CCDC195A0A1B0GUA6 201 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 LRRC14BA6NHZ5 514 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 CCDC69A6NI79 296 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 ALG1L2C9J202 215 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 CPLX1O14810 134 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 PPIP5K2O43314 1243 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 PRKAB2O43741 272 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 ECE2O60344 883 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 SUN1O94901 812 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 PCP11498 1178 aaKnown RBP4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 PDCP20941 246 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 MALP21145 153 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 GATA3P23771 443 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 GJB2P29033 226 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 DDIT3P35638 169 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 BTDP43251 543 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 ANXA11P50995 505 aaKnown RBP4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 HMGN5P82970 282 aaKnown RBP4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 DYRK1AQ13627 763 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 ODF1Q14990 250 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 WTAPQ15007 396 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 ME3Q16798 604 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 VWA1Q6PCB0 445 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 CPLX2Q6PUV4 134 aaKnown RBP4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 OLFM4Q6UX06 510 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 SLC30A10Q6XR72 485 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 SYNE3Q6ZMZ3 975 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 CHST3Q7LGC8 479 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 PEG10Q86TG7 708 aaKnown RBP4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 MB21D2Q8IYB1 491 aaPredicted RBP4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 TEX11Q8IYF3 940 aa4.34□□□□□ -1.71
HMGB3P20-201ENST00000417997 ADGRG5Q8IZF4 528 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms