RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 HSPA12BQ96MM6 686 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 GSDMAQ96QA5 445 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 MED10Q9BTT4 135 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 SPHK2Q9NRA0 654 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 FAM49BQ9NUQ9 324 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 CACNA2D2Q9NY47 1150 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 SH3BP1Q9Y3L3 701 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 PCDHA5Q9Y5H7 936 aa13.65□□□□□ -0.22
LINC00339-202ENST00000416769 ACACAQ13085 2346 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 NEDD8-MDP1E9PL57 170 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 KIAA0391O15091 583 aaKnown RBP13.64□□□□□ -0.23
LINC00339-202ENST00000416769 KLRC4O43908 158 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 RPN1P04843 607 aaKnown RBP13.64□□□□□ -0.23
LINC00339-202ENST00000416769 PPP3CCP48454 512 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 DLG4P78352 724 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 EHHADHQ08426 723 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 CCDC183Q5T5S1 534 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 SPOPLQ6IQ16 392 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 PNPLA1Q8N8W4 532 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 C12orf29Q8N999 325 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 TRIML1Q8N9V2 468 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 SMARCE1Q969G3 411 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 CCDC47Q96A33 483 aaKnown RBP13.64□□□□□ -0.23
LINC00339-202ENST00000416769 TWNKQ96RR1 684 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 NMUR1Q9HB89 426 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 SLC39A2Q9NP94 309 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 DNAJC17Q9NVM6 304 aaKnown RBP13.64□□□□□ -0.23
LINC00339-202ENST00000416769 PLK2Q9NYY3 685 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 IL37Q9NZH6 218 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 TMEM63CQ9P1W3 806 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 KIAA1468Q9P260 1216 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 TBC1D14Q9P2M4 693 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 DEC1Q9P2X7 70 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 SLC6A14Q9UN76 642 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 NEUROG3Q9Y4Z2 214 aa13.64□□□□□ -0.23
LINC00339-202ENST00000416769 LRRIQ3A6PVS8 624 aaPredicted RBP13.63□□□□□ -0.23
LINC00339-202ENST00000416769 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.63□□□□□ -0.23
LINC00339-202ENST00000416769 EIF3DO15371 548 aaKnown RBP eCLIP13.63□□□□□ -0.23
LINC00339-202ENST00000416769 CYP26A1O43174 497 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 SH3BP5O60239 455 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 AP1G2O75843 785 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 CLSTN1O94985 981 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 LETM1O95202 739 aaPredicted RBP13.63□□□□□ -0.23
LINC00339-202ENST00000416769 CAPNS1P04632 268 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 MAP3K7CLP57077 242 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 TRPC3Q13507 836 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 DUOXA1Q1HG43 343 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 ZNF699Q32M78 642 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 KMT5BQ4FZB7 885 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 HSF5Q4G112 596 aaPredicted RBP13.63□□□□□ -0.23
LINC00339-202ENST00000416769 GRAMD4Q6IC98 578 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 CAVIN1Q6NZI2 390 aaKnown RBP13.63□□□□□ -0.23
LINC00339-202ENST00000416769 C19orf48Q6RUI8 117 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 RBM43Q6ZSC3 357 aaKnown RBP13.63□□□□□ -0.23
LINC00339-202ENST00000416769 DDX42Q86XP3 938 aaKnown RBP eCLIP13.63□□□□□ -0.23
LINC00339-202ENST00000416769 MARCH9Q86YJ5 346 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 XXYLT1Q8NBI6 393 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 SLC2A14Q8TDB8 520 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 IPO4Q8TEX9 1081 aaKnown RBP13.63□□□□□ -0.23
LINC00339-202ENST00000416769 KLF16Q9BXK1 252 aaPredicted RBP13.63□□□□□ -0.23
LINC00339-202ENST00000416769 SLC32A1Q9H598 525 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 DMAP1Q9NPF5 467 aaPredicted RBP13.63□□□□□ -0.23
LINC00339-202ENST00000416769 LHX6Q9UPM6 363 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 MSRB2Q9Y3D2 182 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 SLCO1B1Q9Y6L6 691 aa13.63□□□□□ -0.23
LINC00339-202ENST00000416769 GOLGA4Q13439 2230 aaKnown RBP13.62□□□□□ -0.23
LINC00339-202ENST00000416769 CABIN1Q9Y6J0 2220 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 FAM92AA1XBS5 289 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 AP5Z1O43299 807 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 TLR5O60602 858 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 GJB3O75712 270 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 RHOBTB3O94955 611 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 RTN3O95197 1032 aaPredicted RBP13.62□□□□□ -0.23
LINC00339-202ENST00000416769 STAU1O95793 577 aaKnown RBP13.62□□□□□ -0.23
LINC00339-202ENST00000416769 SERPINF2P08697 491 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 TYRP14679 529 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 ADORA2BP29275 332 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 NTSR1P30989 418 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 ATXN3P54252 364 aaPredicted RBP13.62□□□□□ -0.23
LINC00339-202ENST00000416769 GFPT1Q06210 699 aaPredicted RBP13.62□□□□□ -0.23
LINC00339-202ENST00000416769 BIRC3Q13489 604 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 SNX30Q5VWJ9 437 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 BTBD8Q5XKL5 378 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 CACUL1Q86Y37 369 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 CHPFQ8IZ52 775 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 KIAA1958Q8N8K9 716 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 PDZD8Q8NEN9 1154 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 MRGPRX1Q96LB2 322 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 BBS2Q9BXC9 721 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 GTPBP4Q9BZE4 634 aaKnown RBP13.62□□□□□ -0.23
LINC00339-202ENST00000416769 IL21RQ9HBE5 538 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 KIAA1586Q9HCI6 787 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 RMND1Q9NWS8 449 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 EHD2Q9NZN4 543 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 ADAMTS20P59510 1910 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 NBEAQ8NFP9 2946 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 LOC400499M0QZD8 3231 aa13.62□□□□□ -0.23
LINC00339-202ENST00000416769 LAMA5O15230 3695 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 TMEM8BA6NDV4 472 aa13.61□□□□□ -0.23
LINC00339-202ENST00000416769 HHLA1C9JL84 531 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms