RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ZNF646O15015 1829 aaPredicted RBP13.89□□□□□ -0.19
VPS54-203ENST00000409558 TRIP11Q15643 1979 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 CASTOR2A6NHX0 329 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 CCNA1P78396 465 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 KLC2Q9H0B6 622 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 MROH8Q9H579 483 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 PPARGC1AQ9UBK2 798 aaKnown RBP13.89□□□□□ -0.19
VPS54-203ENST00000409558 M0QYT0 321 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 GABBR2O75899 941 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 MYCP01106 439 aaPredicted RBP13.89□□□□□ -0.19
VPS54-203ENST00000409558 DESP17661 470 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 KCNA4P22459 653 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 ALDH18A1P54886 795 aaKnown RBP13.89□□□□□ -0.19
VPS54-203ENST00000409558 VPS52Q8N1B4 723 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 PQLC3Q8N755 202 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 EFCAB3Q8N7B9 438 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 PNPLA1Q8N8W4 532 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 NPLOC4Q8TAT6 608 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 CELF6Q96J87 481 aaKnown RBP13.89□□□□□ -0.19
VPS54-203ENST00000409558 GCOM2Q9BZD3 368 aaPredicted RBP13.89□□□□□ -0.19
VPS54-203ENST00000409558 LRRC4Q9HBW1 653 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 SMYD2Q9NRG4 433 aa13.89□□□□□ -0.19
VPS54-203ENST00000409558 ENO1P06733 434 aaKnown RBP13.88□□□□□ -0.19
VPS54-203ENST00000409558 SRGAP2BP0DMP2 458 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 MYL2P10916 166 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 SCN1AP35498 2009 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 PDE1BQ01064 536 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 SOX4Q06945 474 aaPredicted RBP13.88□□□□□ -0.19
VPS54-203ENST00000409558 CHI3L2Q15782 390 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 LACTB2Q53H82 288 aaPredicted RBP13.88□□□□□ -0.19
VPS54-203ENST00000409558 ZNF484Q5JVG2 852 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 HFE2Q6ZVN8 426 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 PID1Q7Z2X4 250 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 RSPH3Q86UC2 560 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 DNAAF3Q8N9W5 541 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 BEST2Q8NFU1 509 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 CMASQ8NFW8 434 aaPredicted RBP13.88□□□□□ -0.19
VPS54-203ENST00000409558 AZIN2Q96A70 460 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 PGBD4Q96DM1 585 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 MCRS1Q96EZ8 462 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 SRPK1Q96SB4 655 aaKnown RBP13.88□□□□□ -0.19
VPS54-203ENST00000409558 KCNK16Q96T55 309 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 FARP1Q9Y4F1 1045 aaPredicted RBP13.88□□□□□ -0.19
VPS54-203ENST00000409558 PPP2R3BQ9Y5P8 575 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 ARFIP2P53365 341 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 YWHAZP63104 245 aaKnown RBP13.88□□□□□ -0.19
VPS54-203ENST00000409558 SLC6A3Q01959 620 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 ACVR2BQ13705 512 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 KLHL38Q2WGJ6 581 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 PAXIP1Q6ZW49 1069 aaPredicted RBP13.88□□□□□ -0.19
VPS54-203ENST00000409558 GPR142Q7Z601 462 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 PCGF5Q86SE9 256 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 SLC7A14Q8TBB6 771 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 VPS11Q9H270 941 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 LHX5Q9H2C1 402 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 LGALS13Q9UHV8 139 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 LYPLA1O75608 230 aaPredicted RBP13.88□□□□□ -0.19
VPS54-203ENST00000409558 CSH1P0DML2 217 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 CSH2P0DML3 217 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 NOMO1Q15155 1222 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 CCDC6Q16204 474 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 WSCD1Q658N2 575 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 APBB1IPQ7Z5R6 666 aaPredicted RBP13.88□□□□□ -0.19
VPS54-203ENST00000409558 PIGZQ86VD9 579 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 ACSS3Q9H6R3 686 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 USH1CQ9Y6N9 552 aa13.88□□□□□ -0.19
VPS54-203ENST00000409558 IQANK1A0A1B0GTG1 560 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 EDF1O60869 148 aaKnown RBP13.87□□□□□ -0.19
VPS54-203ENST00000409558 DNAJC8O75937 253 aaPredicted RBP13.87□□□□□ -0.19
VPS54-203ENST00000409558 PDHA1P08559 390 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 IL4RP24394 825 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 TKTP29401 623 aaKnown RBP13.87□□□□□ -0.19
VPS54-203ENST00000409558 BNIP1Q12981 228 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 DGKDQ16760 1214 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 SLC25A41Q8N5S1 370 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 DCAKDQ8WVC6 231 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 ASB7Q9H672 318 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 ZNF358Q9NW07 568 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 DNAJC25-GNG10A0A024R161 153 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 MAGEB2O15479 319 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 GAS2O43903 313 aaKnown RBP13.87□□□□□ -0.19
VPS54-203ENST00000409558 HUS1O60921 280 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 HOXA11P31270 313 aaPredicted RBP13.87□□□□□ -0.19
VPS54-203ENST00000409558 ARL4AP40617 200 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 RPL10AP62906 217 aaKnown RBP13.87□□□□□ -0.19
VPS54-203ENST00000409558 PPIL2Q13356 520 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 PDK4Q16654 411 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 PPM1JQ5JR12 505 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 FBXO47Q5MNV8 452 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 MARCH8Q5T0T0 291 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 SYPL2Q5VXT5 272 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 CCDC91Q7Z6B0 441 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 MCUR1Q96AQ8 359 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 NRDE2Q9H7Z3 1164 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 PACSIN3Q9UKS6 424 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 SMG5Q9UPR3 1016 aaKnown RBP13.87□□□□□ -0.19
VPS54-203ENST00000409558 C6orf222P0C671 652 aaPredicted RBP13.87□□□□□ -0.19
VPS54-203ENST00000409558 ERVK-10P10266 1014 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 MGAT1P26572 445 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 RFWD3Q6PCD5 774 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms