RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 FLT3P36888 993 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 PTPN9P43378 593 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 NOP2P46087 812 aaKnown RBP12.87□□□□□ -0.35
LINC00339-201ENST00000404210 ZNF143P52747 638 aaPredicted RBP12.87□□□□□ -0.35
LINC00339-201ENST00000404210 ACAP1Q15027 740 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 SKIV2LQ15477 1246 aaKnown RBP12.87□□□□□ -0.35
LINC00339-201ENST00000404210 SLC5A9Q2M3M2 681 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 SLC25A52Q3SY17 297 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 TXNDC8Q6A555 127 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 MSANTD2Q6P1R3 559 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 REXO1L1PQ8IX06 675 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 EMC1Q8N766 993 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 SMRP1Q8NCR6 262 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 PPM1EQ8WY54 764 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 EDEM1Q92611 657 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 CENPIQ92674 756 aaPredicted RBP12.87□□□□□ -0.35
LINC00339-201ENST00000404210 HLA-CQ95604 372 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 PGAP3Q96FM1 320 aaPredicted RBP12.87□□□□□ -0.35
LINC00339-201ENST00000404210 NECTIN4Q96NY8 510 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 MCEEQ96PE7 176 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 NPY6RQ99463 290 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 UBE2ZQ9H832 354 aaPredicted RBP12.87□□□□□ -0.35
LINC00339-201ENST00000404210 OSGEPQ9NPF4 335 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 KCND1Q9NSA2 647 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 IP6K2Q9UHH9 426 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 COG5Q9UP83 839 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 DUSP10Q9Y6W6 482 aa12.87□□□□□ -0.35
LINC00339-201ENST00000404210 TRANK1O15050 2925 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 A0A0U1RQJ8 604 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 TLR5O60602 858 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 ENDOD1O94919 500 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 OLFM2O95897 454 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 F9P00740 461 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 GJA1P17302 382 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 DESP17661 470 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 HDCP19113 662 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 WEE1P30291 646 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 SDC4P31431 198 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 CYP4F8P98187 520 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 PIGHQ14442 188 aaPredicted RBP12.86□□□□□ -0.35
LINC00339-201ENST00000404210 TEAD2Q15562 447 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 IFI16Q16666 785 aaKnown RBP12.86□□□□□ -0.35
LINC00339-201ENST00000404210 CCDC14Q49A88 953 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 C10orf120Q5SQS8 335 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 TRNP1Q6NT89 227 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 RSRC2Q7L4I2 434 aaKnown RBP12.86□□□□□ -0.35
LINC00339-201ENST00000404210 BNIPLQ7Z465 357 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 MAB21L3Q8N8X9 362 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 KIAA1524Q8TCG1 905 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 ATRIPQ8WXE1 791 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 SUSD6Q92537 303 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 NCAPGQ9BPX3 1015 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 CNPY3Q9BT09 278 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 SLC46A2Q9BY10 475 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 RNF38Q9H0F5 515 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 CCSER2Q9H7U1 834 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 SALL4Q9UJQ4 1053 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 DNMT3LQ9UJW3 386 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 ANAPC7Q9UJX3 599 aa12.86□□□□□ -0.35
LINC00339-201ENST00000404210 TRAV19A0A0A6YYK7 116 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 C2orf78A6NCI8 922 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 GOLGA6L9A6NEM1 432 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 COCHO43405 550 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 TRUB2O95900 331 aaKnown RBP12.85□□□□□ -0.35
LINC00339-201ENST00000404210 TBX18O95935 607 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 PSMA2P25787 234 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 KPNA1P52294 538 aaPredicted RBP12.85□□□□□ -0.35
LINC00339-201ENST00000404210 NAP1L1P55209 391 aaKnown RBP12.85□□□□□ -0.35
LINC00339-201ENST00000404210 SLC7A9P82251 487 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 COG7P83436 770 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 OGDHQ02218 1023 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 NNTQ13423 1086 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 EIF4EBP2Q13542 120 aaPredicted RBP12.85□□□□□ -0.35
LINC00339-201ENST00000404210 ARHGAP29Q52LW3 1261 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 GPR158Q5T848 1215 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 STRADAQ7RTN6 431 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 CCAR2Q8N163 923 aaKnown RBP12.85□□□□□ -0.35
LINC00339-201ENST00000404210 NIPA2Q8N8Q9 360 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 ARL14EPQ8N8R7 260 aaPredicted RBP12.85□□□□□ -0.35
LINC00339-201ENST00000404210 TPCN2Q8NHX9 752 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 ITFG1Q8TB96 612 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 DQX1Q8TE96 717 aaKnown RBP12.85□□□□□ -0.35
LINC00339-201ENST00000404210 CFAP57Q96MR6 1250 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 CYP2S1Q96SQ9 504 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 TRIM7Q9C029 511 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 SMOC2Q9H3U7 446 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.85□□□□□ -0.35
LINC00339-201ENST00000404210 GDE1Q9NZC3 331 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 MARCH2Q9P0N8 246 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 SFMBT1Q9UHJ3 866 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 NUDT5Q9UKK9 219 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 GUCA1BQ9UMX6 200 aa12.85□□□□□ -0.35
LINC00339-201ENST00000404210 H3BQ06 376 aaPredicted RBP12.84□□□□□ -0.35
LINC00339-201ENST00000404210 M0QYT0 321 aa12.84□□□□□ -0.35
LINC00339-201ENST00000404210 NRG2O14511 850 aaPredicted RBP12.84□□□□□ -0.35
LINC00339-201ENST00000404210 MBTPS2O43462 519 aa12.84□□□□□ -0.35
LINC00339-201ENST00000404210 BUB1O43683 1085 aa12.84□□□□□ -0.35
LINC00339-201ENST00000404210 RNF8O76064 485 aa12.84□□□□□ -0.35
LINC00339-201ENST00000404210 PROSCO94903 275 aa12.84□□□□□ -0.35
LINC00339-201ENST00000404210 IGLV3-25P01717 112 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms