RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ZNF397Q8NF99 534 aaPredicted RBP9.7□□□□□ -0.86
VPS53-203ENST00000401468 PJA1Q8NG27 643 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 OR8K1Q8NGG5 319 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 ZSCAN18Q8TBC5 510 aaPredicted RBP9.7□□□□□ -0.86
VPS53-203ENST00000401468 ZNF606Q8WXB4 792 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 CYFIP2Q96F07 1278 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 ZNF512Q96ME7 567 aaPredicted RBP9.7□□□□□ -0.86
VPS53-203ENST00000401468 CDK15Q96Q40 435 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 LHX5Q9H2C1 402 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 ABHD10Q9NUJ1 306 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 ABI2Q9NYB9 513 aaPredicted RBP9.7□□□□□ -0.86
VPS53-203ENST00000401468 IL37Q9NZH6 218 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 SIT1Q9Y3P8 196 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 PCDHB5Q9Y5E4 795 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 GVINP1Q7Z2Y8 2422 aa9.7□□□□□ -0.86
VPS53-203ENST00000401468 FAM92AA1XBS5 289 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 PRR23AA6NEV1 266 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 SHISA7A6NL88 538 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 FAM170BA6NMN3 283 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 HHLA1C9JL84 531 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 TNFRSF10BO14763 440 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 WIPF1O43516 503 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 GFPT2O94808 682 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 CCDC172P0C7W6 258 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 KRT5P13647 590 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 CCDC130P13994 396 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 ATF6P18850 670 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 ANXA13P27216 316 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 KRT9P35527 623 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 TUFMP49411 452 aaKnown RBP9.69□□□□□ -0.86
VPS53-203ENST00000401468 PDE6CP51160 858 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 CACNA2D1P54289 1103 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 FMO1Q01740 532 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 CDR2Q01850 454 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 ASTE1Q2TB18 679 aaPredicted RBP9.69□□□□□ -0.86
VPS53-203ENST00000401468 MGAT5BQ3V5L5 792 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 OTOGLQ3ZCN5 2332 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 LCE2CQ5TA81 110 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 CYP4A22Q5TCH4 519 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 SFMBT2Q5VUG0 894 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 CLEC20AQ6ZU45 233 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 MTSS1LQ765P7 747 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 TMC6Q7Z403 805 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 TTC30AQ86WT1 665 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 TMC8Q8IU68 726 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 DCLK2Q8N568 766 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 SLC2A14Q8TDB8 520 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 STK32AQ8WU08 396 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 SMARCD1Q96GM5 515 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 SPATA17Q96L03 361 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 C8orf48Q96LL4 319 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 HEXIM2Q96MH2 286 aaKnown RBP9.69□□□□□ -0.86
VPS53-203ENST00000401468 LRRC3BQ96PB8 259 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 PANX2Q96RD6 677 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 SMOQ99835 787 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 LRRC3Q9BY71 257 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 DUSP16Q9BY84 665 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 ZNF518BQ9C0D4 1074 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 BRD9Q9H8M2 597 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 ACP6Q9NPH0 428 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 CYLDQ9NQC7 956 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 ASAH2Q9NR71 780 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 SLC2A4RGQ9NR83 387 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 FAM49BQ9NUQ9 324 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 SPATA6Q9NWH7 488 aaPredicted RBP9.69□□□□□ -0.86
VPS53-203ENST00000401468 DLGAP2Q9P1A6 1054 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 TSPAN16Q9UKR8 245 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 NENFQ9UMX5 172 aa9.69□□□□□ -0.86
VPS53-203ENST00000401468 BZW2Q9Y6E2 419 aaKnown RBP9.69□□□□□ -0.86
VPS53-203ENST00000401468 ACACBO00763 2458 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 ABCA7Q8IZY2 2146 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 LAMA1P25391 3075 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 ATP8B3O60423 1300 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 MED19A0JLT2 244 aaPredicted RBP9.68□□□□□ -0.86
VPS53-203ENST00000401468 SLC38A8A6NNN8 435 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 AKR1B15C9JRZ8 316 aaPredicted RBP9.68□□□□□ -0.86
VPS53-203ENST00000401468 CLDN5O00501 218 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 MED7O43513 233 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 BEST1O76090 585 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 CLSTN1O94985 981 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 PRAMEF12O95522 483 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 LSM8O95777 96 aaKnown RBP9.68□□□□□ -0.86
VPS53-203ENST00000401468 CYP1A1P04798 512 aaPredicted RBP9.68□□□□□ -0.86
VPS53-203ENST00000401468 SERPING1P05155 500 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 FAM200BP0CF97 657 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 SETSIPP0DME0 302 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 BDNFP23560 247 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 CYP2F1P24903 491 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 BRD2P25440 801 aaKnown RBP9.68□□□□□ -0.86
VPS53-203ENST00000401468 GABRR2P28476 465 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 GPD2P43304 727 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 PLA2G4AP47712 749 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 ID4P47928 161 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 BCAT1P54687 386 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 EPHA5P54756 1037 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 INSM1Q01101 510 aaPredicted RBP9.68□□□□□ -0.86
VPS53-203ENST00000401468 BST2Q10589 180 aaKnown RBP9.68□□□□□ -0.86
VPS53-203ENST00000401468 RAB41Q5JT25 222 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 GAREM2Q75VX8 874 aa9.68□□□□□ -0.86
VPS53-203ENST00000401468 SPATA2LQ8IUW3 424 aaPredicted RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms