RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 HTR3DQ70Z44 454 aa30.08■■■□□ 2.41
HMGB1-205ENST00000399494 ZNF513Q8N8E2 541 aaPredicted RBP30.08■■■□□ 2.41
HMGB1-205ENST00000399494 NUSAP1Q9BXS6 441 aaKnown RBP30.08■■■□□ 2.41
HMGB1-205ENST00000399494 KRT82Q9NSB4 513 aa30.08■■■□□ 2.41
HMGB1-205ENST00000399494 CHD6Q8TD26 2715 aa30.08■■■□□ 2.41
HMGB1-205ENST00000399494 TRIM24O15164 1050 aa30.07■■■□□ 2.4
HMGB1-205ENST00000399494 GREM1O60565 184 aa30.07■■■□□ 2.4
HMGB1-205ENST00000399494 TRIM49P0CI25 452 aa30.07■■■□□ 2.4
HMGB1-205ENST00000399494 TRIM49CP0CI26 452 aa30.07■■■□□ 2.4
HMGB1-205ENST00000399494 CCDC130P13994 396 aa30.07■■■□□ 2.4
HMGB1-205ENST00000399494 TRMT11Q7Z4G4 463 aaKnown RBP30.07■■■□□ 2.4
HMGB1-205ENST00000399494 TERB1Q8NA31 727 aa30.07■■■□□ 2.4
HMGB1-205ENST00000399494 MMRN2Q9H8L6 949 aa30.07■■■□□ 2.4
HMGB1-205ENST00000399494 STARD13Q9Y3M8 1113 aa30.07■■■□□ 2.4
HMGB1-205ENST00000399494 TNRC6BQ9UPQ9 1833 aaKnown RBP30.06■■■□□ 2.4
HMGB1-205ENST00000399494 SLC16A3O15427 465 aaKnown RBP30.06■■■□□ 2.4
HMGB1-205ENST00000399494 IRF1P10914 325 aa30.06■■■□□ 2.4
HMGB1-205ENST00000399494 ENPEPQ07075 957 aa30.06■■■□□ 2.4
HMGB1-205ENST00000399494 FOXC1Q12948 553 aa30.06■■■□□ 2.4
HMGB1-205ENST00000399494 PAK1Q13153 545 aa30.06■■■□□ 2.4
HMGB1-205ENST00000399494 ORC1Q13415 861 aa30.06■■■□□ 2.4
HMGB1-205ENST00000399494 C10orf76Q5T2E6 689 aa30.06■■■□□ 2.4
HMGB1-205ENST00000399494 SLC23A3Q6PIS1 610 aa30.06■■■□□ 2.4
HMGB1-205ENST00000399494 NUDT18Q6ZVK8 323 aa30.06■■■□□ 2.4
HMGB1-205ENST00000399494 SLC2A14Q8TDB8 520 aa30.06■■■□□ 2.4
HMGB1-205ENST00000399494 KLF16Q9BXK1 252 aaPredicted RBP30.06■■■□□ 2.4
HMGB1-205ENST00000399494 FBXO44Q9H4M3 255 aa30.06■■■□□ 2.4
HMGB1-205ENST00000399494 PILRBQ9UKJ0 227 aa30.06■■■□□ 2.4
HMGB1-205ENST00000399494 MYO18AQ92614 2054 aaKnown RBP30.06■■■□□ 2.4
HMGB1-205ENST00000399494 PLXND1Q9Y4D7 1925 aa30.05■■■□□ 2.4
HMGB1-205ENST00000399494 C1QTNF9BB2RNN3 333 aa30.05■■■□□ 2.4
HMGB1-205ENST00000399494 TLR5O60602 858 aa30.05■■■□□ 2.4
HMGB1-205ENST00000399494 TBX18O95935 607 aa30.05■■■□□ 2.4
HMGB1-205ENST00000399494 C1QTNF9P0C862 333 aa30.05■■■□□ 2.4
HMGB1-205ENST00000399494 GABRG2P18507 467 aa30.05■■■□□ 2.4
HMGB1-205ENST00000399494 PIK3CAP42336 1068 aa30.05■■■□□ 2.4
HMGB1-205ENST00000399494 NDST1P52848 882 aa30.05■■■□□ 2.4
HMGB1-205ENST00000399494 MAP3K7CLP57077 242 aa30.05■■■□□ 2.4
HMGB1-205ENST00000399494 ZACNQ401N2 412 aa30.05■■■□□ 2.4
HMGB1-205ENST00000399494 PEAR1Q5VY43 1037 aaPredicted RBP30.05■■■□□ 2.4
HMGB1-205ENST00000399494 SV2AQ7L0J3 742 aa30.05■■■□□ 2.4
HMGB1-205ENST00000399494 MIB1Q86YT6 1006 aa30.05■■■□□ 2.4
HMGB1-205ENST00000399494 ZC3H3Q8IXZ2 948 aaKnown RBP30.05■■■□□ 2.4
HMGB1-205ENST00000399494 NACA2Q9H009 215 aa30.05■■■□□ 2.4
HMGB1-205ENST00000399494 HMGXB4Q9UGU5 601 aa30.05■■■□□ 2.4
HMGB1-205ENST00000399494 TOP3BO95985 862 aaKnown RBP30.04■■■□□ 2.4
HMGB1-205ENST00000399494 P4HA1P13674 534 aa30.04■■■□□ 2.4
HMGB1-205ENST00000399494 ITPKAP23677 461 aa30.04■■■□□ 2.4
HMGB1-205ENST00000399494 NTSR1P30989 418 aa30.04■■■□□ 2.4
HMGB1-205ENST00000399494 DPP6P42658 865 aa30.04■■■□□ 2.4
HMGB1-205ENST00000399494 GCLMP48507 274 aa30.04■■■□□ 2.4
HMGB1-205ENST00000399494 STX17P56962 302 aa30.04■■■□□ 2.4
HMGB1-205ENST00000399494 C1orf220Q5T0J3 134 aa30.04■■■□□ 2.4
HMGB1-205ENST00000399494 TCERG1LQ5VWI1 586 aa30.04■■■□□ 2.4
HMGB1-205ENST00000399494 LYSMD4Q5XG99 296 aa30.04■■■□□ 2.4
HMGB1-205ENST00000399494 UNC93AQ86WB7 457 aa30.04■■■□□ 2.4
HMGB1-205ENST00000399494 C12orf29Q8N999 325 aa30.04■■■□□ 2.4
HMGB1-205ENST00000399494 DEFB124Q8NES8 71 aa30.04■■■□□ 2.4
HMGB1-205ENST00000399494 GPT2Q8TD30 523 aa30.04■■■□□ 2.4
HMGB1-205ENST00000399494 TAF4BQ92750 862 aa30.04■■■□□ 2.4
HMGB1-205ENST00000399494 TLR8Q9NR97 1041 aaKnown RBP30.04■■■□□ 2.4
HMGB1-205ENST00000399494 STX10O60499 249 aa30.03■■■□□ 2.4
HMGB1-205ENST00000399494 ENGP17813 658 aa30.03■■■□□ 2.4
HMGB1-205ENST00000399494 SPINK2P20155 84 aa30.03■■■□□ 2.4
HMGB1-205ENST00000399494 WASP42768 502 aa30.03■■■□□ 2.4
HMGB1-205ENST00000399494 DCAF17Q5H9S7 520 aaPredicted RBP30.03■■■□□ 2.4
HMGB1-205ENST00000399494 TTI2Q6NXR4 508 aa30.03■■■□□ 2.4
HMGB1-205ENST00000399494 UNQ6494/PRO21346Q6UXR6 183 aa30.03■■■□□ 2.4
HMGB1-205ENST00000399494 CEP63Q96MT8 703 aa30.03■■■□□ 2.4
HMGB1-205ENST00000399494 OSER1Q9NX31 292 aa30.03■■■□□ 2.4
HMGB1-205ENST00000399494 A0A1W2PQF6 199 aa30.02■■■□□ 2.4
HMGB1-205ENST00000399494 ASS1P00966 412 aaKnown RBP30.02■■■□□ 2.4
HMGB1-205ENST00000399494 MAPK8P45983 427 aa30.02■■■□□ 2.4
HMGB1-205ENST00000399494 PPP3CAQ08209 521 aa30.02■■■□□ 2.4
HMGB1-205ENST00000399494 CCDC40Q4G0X9 1142 aa30.02■■■□□ 2.4
HMGB1-205ENST00000399494 GRAMD4Q6IC98 578 aa30.02■■■□□ 2.4
HMGB1-205ENST00000399494 IMPG2Q9BZV3 1241 aa30.02■■■□□ 2.4
HMGB1-205ENST00000399494 CD248Q9HCU0 757 aa30.02■■■□□ 2.4
HMGB1-205ENST00000399494 CYLDQ9NQC7 956 aa30.02■■■□□ 2.4
HMGB1-205ENST00000399494 FAM49BQ9NUQ9 324 aa30.02■■■□□ 2.4
HMGB1-205ENST00000399494 DNAJC17Q9NVM6 304 aaKnown RBP30.02■■■□□ 2.4
HMGB1-205ENST00000399494 ARMCX3Q9UH62 379 aaPredicted RBP30.02■■■□□ 2.4
HMGB1-205ENST00000399494 ATXN2Q99700 1313 aaKnown RBP30.01■■■□□ 2.4
HMGB1-205ENST00000399494 HHLA1C9JL84 531 aa30.01■■■□□ 2.39
HMGB1-205ENST00000399494 AP5Z1O43299 807 aa30.01■■■□□ 2.39
HMGB1-205ENST00000399494 MBD3O95983 291 aa30.01■■■□□ 2.39
HMGB1-205ENST00000399494 HLA-DRAP01903 254 aa30.01■■■□□ 2.39
HMGB1-205ENST00000399494 HOXB2P14652 356 aa30.01■■■□□ 2.39
HMGB1-205ENST00000399494 HOXD12P35452 270 aa30.01■■■□□ 2.39
HMGB1-205ENST00000399494 ATP5C1P36542 298 aaKnown RBP30.01■■■□□ 2.39
HMGB1-205ENST00000399494 EGFLAMQ63HQ2 1017 aa30.01■■■□□ 2.39
HMGB1-205ENST00000399494 SPOPLQ6IQ16 392 aa30.01■■■□□ 2.39
HMGB1-205ENST00000399494 FOXR2Q6PJQ5 311 aa30.01■■■□□ 2.39
HMGB1-205ENST00000399494 SLC36A4Q6YBV0 504 aa30.01■■■□□ 2.39
HMGB1-205ENST00000399494 GPRIN1Q7Z2K8 1008 aa30.01■■■□□ 2.39
HMGB1-205ENST00000399494 DEFB119Q8N690 84 aa30.01■■■□□ 2.39
HMGB1-205ENST00000399494 ACOX2Q99424 681 aa30.01■■■□□ 2.39
HMGB1-205ENST00000399494 TMEM121BQ9BXQ6 578 aaPredicted RBP30.01■■■□□ 2.39
HMGB1-205ENST00000399494 TMEM8AQ9HCN3 771 aa30.01■■■□□ 2.39
HMGB1-205ENST00000399494 CALCOCO1Q9P1Z2 691 aa30.01■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms