RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 IRF1P10914 325 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 COG7P83436 770 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 UBXN2BQ14CS0 331 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 HTR3DQ70Z44 454 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 TMEM35BQ8NCS4 154 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 RNF139Q8WU17 664 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 EDEM1Q92611 657 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 MARCH2Q9P0N8 246 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 LSM7Q9UK45 103 aaKnown RBP22.74■■□□□ 1.23
CLN3-207ENST00000395653 MYO6Q9UM54 1294 aa22.74■■□□□ 1.23
CLN3-207ENST00000395653 PI15O43692 258 aa22.73■■□□□ 1.23
CLN3-207ENST00000395653 GREM1O60565 184 aa22.73■■□□□ 1.23
CLN3-207ENST00000395653 LSM8O95777 96 aaKnown RBP22.73■■□□□ 1.23
CLN3-207ENST00000395653 TARSP26639 723 aaKnown RBP22.73■■□□□ 1.23
CLN3-207ENST00000395653 UBASH3AP57075 661 aa22.73■■□□□ 1.23
CLN3-207ENST00000395653 SNX16P57768 344 aa22.73■■□□□ 1.23
CLN3-207ENST00000395653 ZNF445P59923 1031 aa22.73■■□□□ 1.23
CLN3-207ENST00000395653 AMPD2Q01433 879 aa22.73■■□□□ 1.23
CLN3-207ENST00000395653 NR1H3Q13133 447 aa22.73■■□□□ 1.23
CLN3-207ENST00000395653 TAF3Q5VWG9 929 aa22.73■■□□□ 1.23
CLN3-207ENST00000395653 CCDC105Q8IYK2 499 aa22.73■■□□□ 1.23
CLN3-207ENST00000395653 ADGRG2Q8IZP9 1017 aa22.73■■□□□ 1.23
CLN3-207ENST00000395653 WBP2Q969T9 261 aa22.73■■□□□ 1.23
CLN3-207ENST00000395653 TRIM62Q9BVG3 475 aa22.73■■□□□ 1.23
CLN3-207ENST00000395653 ZNF318Q5VUA4 2279 aa22.73■■□□□ 1.23
CLN3-207ENST00000395653 F5P12259 2224 aa22.72■■□□□ 1.23
CLN3-207ENST00000395653 FAM170BA6NMN3 283 aa22.72■■□□□ 1.23
CLN3-207ENST00000395653 SCAMP3O14828 347 aaKnown RBP22.72■■□□□ 1.23
CLN3-207ENST00000395653 NUBP1P53384 320 aa22.72■■□□□ 1.23
CLN3-207ENST00000395653 CDR2Q01850 454 aa22.72■■□□□ 1.23
CLN3-207ENST00000395653 MSANTD2Q6P1R3 559 aa22.72■■□□□ 1.23
CLN3-207ENST00000395653 BEND5Q7L4P6 421 aa22.72■■□□□ 1.23
CLN3-207ENST00000395653 FMNL3Q8IVF7 1028 aa22.72■■□□□ 1.23
CLN3-207ENST00000395653 BBS7Q8IWZ6 715 aa22.72■■□□□ 1.23
CLN3-207ENST00000395653 ZNF687Q8N1G0 1237 aa22.72■■□□□ 1.23
CLN3-207ENST00000395653 IPO4Q8TEX9 1081 aaKnown RBP22.72■■□□□ 1.23
CLN3-207ENST00000395653 NCAM2O15394 837 aa22.71■■□□□ 1.23
CLN3-207ENST00000395653 STC2O76061 302 aa22.71■■□□□ 1.23
CLN3-207ENST00000395653 MMEP08473 750 aa22.71■■□□□ 1.23
CLN3-207ENST00000395653 GJA4P35212 333 aa22.71■■□□□ 1.23
CLN3-207ENST00000395653 PTPN20Q4JDL3 420 aa22.71■■□□□ 1.23
CLN3-207ENST00000395653 TXNDC11Q6PKC3 985 aa22.71■■□□□ 1.23
CLN3-207ENST00000395653 FAM149B1Q96BN6 582 aa22.71■■□□□ 1.23
CLN3-207ENST00000395653 CHFRQ96EP1 664 aa22.71■■□□□ 1.23
CLN3-207ENST00000395653 TJP2Q9UDY2 1190 aa22.71■■□□□ 1.23
CLN3-207ENST00000395653 HBS1LQ9Y450 684 aaKnown RBP22.71■■□□□ 1.23
CLN3-207ENST00000395653 MTF2Q9Y483 593 aaPredicted RBP22.71■■□□□ 1.23
CLN3-207ENST00000395653 SLC12A8A0AV02 714 aa22.7■■□□□ 1.22
CLN3-207ENST00000395653 CYP17A1P05093 508 aa22.7■■□□□ 1.22
CLN3-207ENST00000395653 CCDC172P0C7W6 258 aa22.7■■□□□ 1.22
CLN3-207ENST00000395653 FERP16591 822 aa22.7■■□□□ 1.22
CLN3-207ENST00000395653 DHCR24Q15392 516 aa22.7■■□□□ 1.22
CLN3-207ENST00000395653 FIGNQ5HY92 759 aa22.7■■□□□ 1.22
CLN3-207ENST00000395653 Q6ZNB5 142 aa22.7■■□□□ 1.22
CLN3-207ENST00000395653 SLC20A1Q8WUM9 679 aa22.7■■□□□ 1.22
CLN3-207ENST00000395653 BAP1Q92560 729 aa22.7■■□□□ 1.22
CLN3-207ENST00000395653 PLD4Q96BZ4 506 aa22.7■■□□□ 1.22
CLN3-207ENST00000395653 EDEM3Q9BZQ6 932 aa22.7■■□□□ 1.22
CLN3-207ENST00000395653 DCLK3Q9C098 648 aa22.7■■□□□ 1.22
CLN3-207ENST00000395653 TTYH3Q9C0H2 523 aa22.7■■□□□ 1.22
CLN3-207ENST00000395653 ASNSD1Q9NWL6 643 aa22.7■■□□□ 1.22
CLN3-207ENST00000395653 DLGAP2Q9P1A6 1054 aa22.7■■□□□ 1.22
CLN3-207ENST00000395653 NDRG2Q9UN36 371 aaKnown RBP22.7■■□□□ 1.22
CLN3-207ENST00000395653 ADH1CP00326 375 aa22.69■■□□□ 1.22
CLN3-207ENST00000395653 FYNP06241 537 aa22.69■■□□□ 1.22
CLN3-207ENST00000395653 GLI1P08151 1106 aa22.69■■□□□ 1.22
CLN3-207ENST00000395653 PBX1P40424 430 aa22.69■■□□□ 1.22
CLN3-207ENST00000395653 MAGEA9P43362 315 aa22.69■■□□□ 1.22
CLN3-207ENST00000395653 NOMO3P69849 1222 aa22.69■■□□□ 1.22
CLN3-207ENST00000395653 FMO1Q01740 532 aa22.69■■□□□ 1.22
CLN3-207ENST00000395653 TRIM72Q6ZMU5 477 aa22.69■■□□□ 1.22
CLN3-207ENST00000395653 ZDHHC17Q8IUH5 632 aa22.69■■□□□ 1.22
CLN3-207ENST00000395653 CLDN23Q96B33 292 aa22.69■■□□□ 1.22
CLN3-207ENST00000395653 SYNCQ9H7C4 482 aa22.69■■□□□ 1.22
CLN3-207ENST00000395653 POPDC2Q9HBU9 364 aa22.69■■□□□ 1.22
CLN3-207ENST00000395653 IFNKQ9P0W0 207 aa22.69■■□□□ 1.22
CLN3-207ENST00000395653 SFMBT1Q9UHJ3 866 aa22.69■■□□□ 1.22
CLN3-207ENST00000395653 ZNF510Q9Y2H8 683 aa22.69■■□□□ 1.22
CLN3-207ENST00000395653 HCN4Q9Y3Q4 1203 aa22.69■■□□□ 1.22
CLN3-207ENST00000395653 ERBB2P04626 1255 aa22.68■■□□□ 1.22
CLN3-207ENST00000395653 DCNP07585 359 aaKnown RBP22.68■■□□□ 1.22
CLN3-207ENST00000395653 NCAM1P13591 858 aa22.68■■□□□ 1.22
CLN3-207ENST00000395653 CHRNB2P17787 502 aa22.68■■□□□ 1.22
CLN3-207ENST00000395653 RPS9P46781 194 aaKnown RBP22.68■■□□□ 1.22
CLN3-207ENST00000395653 GABRB2P47870 512 aa22.68■■□□□ 1.22
CLN3-207ENST00000395653 YWHAZP63104 245 aaKnown RBP22.68■■□□□ 1.22
CLN3-207ENST00000395653 ARID5AQ03989 594 aa22.68■■□□□ 1.22
CLN3-207ENST00000395653 FZD5Q13467 585 aa22.68■■□□□ 1.22
CLN3-207ENST00000395653 PON2Q15165 354 aa22.68■■□□□ 1.22
CLN3-207ENST00000395653 EFHC1Q5JVL4 640 aa22.68■■□□□ 1.22
CLN3-207ENST00000395653 RHBDF2Q6PJF5 856 aa22.68■■□□□ 1.22
CLN3-207ENST00000395653 TOGARAM2Q6ZUX3 1019 aa22.68■■□□□ 1.22
CLN3-207ENST00000395653 EXOC4Q96A65 974 aa22.68■■□□□ 1.22
CLN3-207ENST00000395653 PIWIL1Q96J94 861 aaKnown RBP22.68■■□□□ 1.22
CLN3-207ENST00000395653 NUP58Q9BVL2 599 aa22.68■■□□□ 1.22
CLN3-207ENST00000395653 KCNH6Q9H252 994 aa22.68■■□□□ 1.22
CLN3-207ENST00000395653 MIA3Q5JRA6 1907 aa22.68■■□□□ 1.22
CLN3-207ENST00000395653 TRDMT1O14717 391 aaKnown RBP22.67■■□□□ 1.22
CLN3-207ENST00000395653 CAPN9O14815 690 aa22.67■■□□□ 1.22
CLN3-207ENST00000395653 KLKB1P03952 638 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms