RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 RIOX2Q8IUF8 465 aa21.41■■□□□ 1.02
CLK3-202ENST00000395066 CNPY3Q9BT09 278 aa21.41■■□□□ 1.02
CLK3-202ENST00000395066 PDGFCQ9NRA1 345 aa21.41■■□□□ 1.02
CLK3-202ENST00000395066 TAS2R1Q9NYW7 299 aa21.41■■□□□ 1.02
CLK3-202ENST00000395066 MTO1Q9Y2Z2 717 aaKnown RBP21.41■■□□□ 1.02
CLK3-202ENST00000395066 TRIP11Q15643 1979 aa21.41■■□□□ 1.02
CLK3-202ENST00000395066 INHBEP58166 350 aa21.41■■□□□ 1.02
CLK3-202ENST00000395066 SLC26A11Q86WA9 606 aa21.41■■□□□ 1.02
CLK3-202ENST00000395066 PCDH19Q8TAB3 1148 aa21.41■■□□□ 1.02
CLK3-202ENST00000395066 OXNAD1Q96HP4 312 aaPredicted RBP21.41■■□□□ 1.02
CLK3-202ENST00000395066 B3GNT5Q9BYG0 378 aa21.41■■□□□ 1.02
CLK3-202ENST00000395066 IFT122Q9HBG6 1241 aa21.41■■□□□ 1.02
CLK3-202ENST00000395066 SLC17A6Q9P2U8 582 aa21.41■■□□□ 1.02
CLK3-202ENST00000395066 MAD1L1Q9Y6D9 718 aa21.41■■□□□ 1.02
CLK3-202ENST00000395066 A0A087WZ62 844 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 TBX10O75333 385 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 ZBED1O96006 694 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 PFKMP08237 780 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 ZCCHC23Q6ZST2 131 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 CHSY1Q86X52 802 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 SCUBE3Q8IX30 993 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 UNC5BQ8IZJ1 945 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 STMN2Q93045 179 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 FDXACB1Q9BRP7 624 aaPredicted RBP21.4■■□□□ 1.02
CLK3-202ENST00000395066 FAM49BQ9NUQ9 324 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 PIH1D1Q9NWS0 290 aaKnown RBP21.4■■□□□ 1.02
CLK3-202ENST00000395066 SCOCQ9UIL1 159 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 SNUPNO95149 360 aaKnown RBP21.4■■□□□ 1.02
CLK3-202ENST00000395066 ESRRAP11474 423 aaPredicted RBP21.4■■□□□ 1.02
CLK3-202ENST00000395066 BCAR1P56945 870 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 BST1Q10588 318 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 RBBP5Q15291 538 aaKnown RBP21.4■■□□□ 1.02
CLK3-202ENST00000395066 ZRSR2Q15696 482 aaKnown RBP21.4■■□□□ 1.02
CLK3-202ENST00000395066 SLC10A6Q3KNW5 377 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 CELF3Q5SZQ8 465 aaKnown RBP21.4■■□□□ 1.02
CLK3-202ENST00000395066 MROH9Q5TGP6 573 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 WDR78Q5VTH9 848 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 TTC39BQ5VTQ0 682 aaPredicted RBP21.4■■□□□ 1.02
CLK3-202ENST00000395066 OR52E8Q6IFG1 317 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 CCDC62Q6P9F0 684 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 ARID3BQ8IVW6 561 aaPredicted RBP21.4■■□□□ 1.02
CLK3-202ENST00000395066 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.4■■□□□ 1.02
CLK3-202ENST00000395066 FAM172AQ8WUF8 416 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 FGD4Q96M96 766 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 C20orf27Q9GZN8 174 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 PIDD1Q9HB75 910 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 PCMTD2Q9NV79 361 aa21.4■■□□□ 1.02
CLK3-202ENST00000395066 CHADO15335 359 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 VTNP04004 478 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 YY1P25490 414 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 TMPRSS15P98073 1019 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 RNF220Q5VTB9 566 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 PMF1Q6P1K2 205 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 TREML1Q86YW5 311 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 MMADHCQ9H3L0 296 aaPredicted RBP21.39■■□□□ 1.01
CLK3-202ENST00000395066 ARHGEF4Q9NR80 690 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 ETNK2Q9NVF9 386 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 TNFSF13BQ9Y275 285 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 C2CD2Q9Y426 696 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 LOC285556D6RIA3 1793 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 POLR2AP24928 1970 aaKnown RBP21.39■■□□□ 1.01
CLK3-202ENST00000395066 USP2O75604 605 aaPredicted RBP21.39■■□□□ 1.01
CLK3-202ENST00000395066 TGDSO95455 350 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 METTL18O95568 372 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 ENO1P06733 434 aaKnown RBP21.39■■□□□ 1.01
CLK3-202ENST00000395066 TGFB3P10600 412 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 OSBPP22059 807 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 KRT72Q14CN4 511 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 CHI3L2Q15782 390 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 GOLGA7BQ2TAP0 167 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 APOBEC3FQ8IUX4 373 aaKnown RBP21.39■■□□□ 1.01
CLK3-202ENST00000395066 SNRNP25Q9BV90 132 aaKnown RBP21.39■■□□□ 1.01
CLK3-202ENST00000395066 MIS12Q9H081 205 aa21.39■■□□□ 1.01
CLK3-202ENST00000395066 STX18Q9P2W9 335 aaKnown RBP21.39■■□□□ 1.01
CLK3-202ENST00000395066 SEC23IPQ9Y6Y8 1000 aaKnown RBP21.39■■□□□ 1.01
CLK3-202ENST00000395066 WDR90Q96KV7 1748 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 HCRTO43612 131 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 RFPL1O75677 317 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 IL18RAPO95256 599 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 TFDP2Q14188 446 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 CWF19L1Q69YN2 538 aaKnown RBP21.38■■□□□ 1.01
CLK3-202ENST00000395066 UNC5AQ6ZN44 842 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 PCDH18Q9HCL0 1135 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 TXNRD2Q9NNW7 524 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 SDAD1Q9NVU7 687 aaKnown RBP eCLIP21.38■■□□□ 1.01
CLK3-202ENST00000395066 PAK5Q9P286 719 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 MFHAS1Q9Y4C4 1052 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 APOL1O14791 398 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 VDRP11473 427 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 GBE1Q04446 702 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 AP1B1Q10567 949 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 BIRC2Q13490 618 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 PPP1R26Q5T8A7 1209 aaPredicted RBP21.38■■□□□ 1.01
CLK3-202ENST00000395066 ILDR2Q71H61 639 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 MFN1Q8IWA4 741 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 PPFIBP2Q8ND30 876 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 PLLPQ9Y342 182 aa21.38■■□□□ 1.01
CLK3-202ENST00000395066 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP21.37■■□□□ 1.01
CLK3-202ENST00000395066 SLC15A5A6NIM6 579 aa21.37■■□□□ 1.01
CLK3-202ENST00000395066 H3BRJ5 948 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms