RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 B3GNT5Q9BYG0 378 aa16.69■□□□□ 0.26
PCDH1-203ENST00000394536 SIK2Q9H0K1 926 aa16.69■□□□□ 0.26
PCDH1-203ENST00000394536 UBP1Q9NZI7 540 aa16.69■□□□□ 0.26
PCDH1-203ENST00000394536 KLK14Q9P0G3 267 aa16.69■□□□□ 0.26
PCDH1-203ENST00000394536 SPATA31C2B4DYI2 1134 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 TBC1D12O60347 775 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 KLHL2O95198 593 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 SATB1Q01826 763 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 SP2Q02086 613 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 OASLQ15646 514 aaKnown RBP16.68■□□□□ 0.26
PCDH1-203ENST00000394536 B3GNT9Q6UX72 402 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 BANPQ8N9N5 519 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 GSTCDQ8NEC7 633 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 SLC35B2Q8TB61 432 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 RNF157Q96PX1 679 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 ACO2Q99798 780 aaKnown RBP16.68■□□□□ 0.26
PCDH1-203ENST00000394536 ETNK2Q9NVF9 386 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 GTSE1Q9NYZ3 720 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 SPDYE5A6NIY4 337 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 TBX10O75333 385 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 PTPRAP18433 802 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 RTP1P59025 263 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 CNGA3Q16281 694 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 MIPOL1Q8TD10 442 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 WDR60Q8WVS4 1066 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 SLC44A1Q8WWI5 657 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 PRR11Q96HE9 360 aaPredicted RBP16.68■□□□□ 0.26
PCDH1-203ENST00000394536 SERPINI1Q99574 410 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 ZCWPW1Q9H0M4 648 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 E7ENQ6 273 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 AP1G2O75843 785 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 CYTH1Q15438 398 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 FKBP1CQ5VVH2 108 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 IGDCC3Q8IVU1 814 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 RYBPQ8N488 228 aaPredicted RBP16.68■□□□□ 0.26
PCDH1-203ENST00000394536 MAB21L3Q8N8X9 362 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 EXT2Q93063 718 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 MMP19Q99542 508 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 FRMD8P1Q9BZ68 369 aaPredicted RBP16.68■□□□□ 0.26
PCDH1-203ENST00000394536 SMARCAD1Q9H4L7 1026 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 BCAP29Q9UHQ4 241 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 SLC39A10Q9ULF5 831 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 SOX13Q9UN79 622 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 AP4E1Q9UPM8 1137 aa16.68■□□□□ 0.26
PCDH1-203ENST00000394536 IL18RAPO95256 599 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 GSTA2P09210 222 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 MGAT1P26572 445 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 SULT1E1P49888 294 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 NUDT2P50583 147 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 GTF2A2P52657 109 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 TRMT5Q32P41 509 aaKnown RBP16.67■□□□□ 0.26
PCDH1-203ENST00000394536 HSDL1Q3SXM5 330 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 GJC2Q5T442 439 aaPredicted RBP16.67■□□□□ 0.26
PCDH1-203ENST00000394536 IRGCQ6NXR0 463 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 TRMT10BQ6PF06 316 aaKnown RBP16.67■□□□□ 0.26
PCDH1-203ENST00000394536 TMEM130Q8N3G9 435 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 SLC7A6OSQ96CW6 309 aaPredicted RBP16.67■□□□□ 0.26
PCDH1-203ENST00000394536 CMTM5Q96DZ9 223 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 ELP3Q9H9T3 547 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 ACKR2O00590 384 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 RALBP11234 206 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 SLC1A6P48664 564 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 FAM183BPQ6ZVS7 135 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 DPP9Q86TI2 863 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 TFB1MQ8WVM0 346 aaKnown RBP16.67■□□□□ 0.26
PCDH1-203ENST00000394536 PHACTR1Q9C0D0 580 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 TASP1Q9H6P5 420 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 DHX33Q9H6R0 707 aaKnown RBP16.67■□□□□ 0.26
PCDH1-203ENST00000394536 ANLNQ9NQW6 1124 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 PRMT7Q9NVM4 692 aaPredicted RBP16.67■□□□□ 0.26
PCDH1-203ENST00000394536 SMCHD1A6NHR9 2005 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 SDR42E2A6NKP2 422 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 KPNA7A9QM74 516 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 TOP3BO95985 862 aaKnown RBP16.67■□□□□ 0.26
PCDH1-203ENST00000394536 MSX2P35548 267 aaPredicted RBP16.67■□□□□ 0.26
PCDH1-203ENST00000394536 TTLL4Q14679 1199 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 RPS6KA2Q15349 733 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 EFHC1Q5JVL4 640 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 METTL7BQ6UX53 244 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 COLGALT1Q8NBJ5 622 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 CEP70Q8NHQ1 597 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 ZNF398Q8TD17 642 aa16.67■□□□□ 0.26
PCDH1-203ENST00000394536 GCOM2Q9BZD3 368 aaPredicted RBP16.67■□□□□ 0.26
PCDH1-203ENST00000394536 PFDN1O60925 122 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 OAS1P00973 400 aaKnown RBP16.66■□□□□ 0.26
PCDH1-203ENST00000394536 ERVK-10P10266 1014 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 ZFXP17010 805 aaPredicted RBP16.66■□□□□ 0.26
PCDH1-203ENST00000394536 FSTL1Q12841 308 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 SCARA3Q6AZY7 606 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 ANO7Q6IWH7 933 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 TMEM192Q8IY95 271 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 TNS4Q8IZW8 715 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 UTP4Q969X6 686 aaKnown RBP16.66■□□□□ 0.26
PCDH1-203ENST00000394536 SNRNP25Q9BV90 132 aaKnown RBP16.66■□□□□ 0.26
PCDH1-203ENST00000394536 THAP1Q9NVV9 213 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 KCNK4Q9NYG8 393 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 CLEC11AQ9Y240 323 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 TYROBPO43914 113 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 POLBP06746 335 aa16.66■□□□□ 0.26
PCDH1-203ENST00000394536 NUMBP49757 651 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms