RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 MTBPQ96DY7 904 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 POPDC2Q9HBU9 364 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 ANLNQ9NQW6 1124 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 THEGQ9P2T0 379 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 PHTF1Q9UMS5 762 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 LAMB4A4D0S4 1761 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 SIGLEC16A6NMB1 481 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 ANGPT2O15123 496 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 STX7O15400 261 aaKnown RBP17.11■□□□□ 0.33
SCN3B-202ENST00000392770 MMP3P08254 477 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 PTPN1P18031 435 aaKnown RBP17.11■□□□□ 0.33
SCN3B-202ENST00000392770 EEF1B2P24534 225 aaKnown RBP17.11■□□□□ 0.33
SCN3B-202ENST00000392770 ACTN3Q08043 901 aaPredicted RBP17.11■□□□□ 0.33
SCN3B-202ENST00000392770 NPY5RQ15761 445 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 LBX2Q6XYB7 198 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 IRF2BP2Q7Z5L9 587 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 UNC93AQ86WB7 457 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 UNC45BQ8IWX7 931 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 RNF217Q8TC41 542 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 SHC3Q92529 594 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.11■□□□□ 0.33
SCN3B-202ENST00000392770 TEDDM1Q5T9Z0 273 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 SRLQ86TD4 932 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 LCA5Q86VQ0 697 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 C12orf56Q8IXR9 622 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 CDK5RAP1Q96SZ6 601 aaKnown RBP17.11■□□□□ 0.33
SCN3B-202ENST00000392770 APOL5Q9BWW9 433 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 ADGRA2Q96PE1 1338 aa17.11■□□□□ 0.33
SCN3B-202ENST00000392770 POLD3Q15054 466 aaPredicted RBP17.1■□□□□ 0.33
SCN3B-202ENST00000392770 HSP90AA5PQ58FG0 334 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 CCDC124Q96CT7 223 aaKnown RBP17.1■□□□□ 0.33
SCN3B-202ENST00000392770 FOPNLQ96NB1 174 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 SHOC2Q9UQ13 582 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 GLTPD2A6NH11 291 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 BTBD19C9JJ37 291 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 CABYRO75952 493 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 KDELR1P24390 212 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 OVGP1Q12889 678 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 PCBP1Q15365 356 aaKnown RBP eCLIP17.1■□□□□ 0.33
SCN3B-202ENST00000392770 SNX31Q8N9S9 440 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 HTR3CQ8WXA8 447 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 CCDC138Q96M89 665 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 RUVBL2Q9Y230 463 aaKnown RBP17.1■□□□□ 0.33
SCN3B-202ENST00000392770 VGLL3A8MV65 326 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 E2F6O75461 281 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 NR2C2P49116 596 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 CNGA2Q16280 664 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 HSDL1Q3SXM5 330 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 TMEM39AQ9NV64 488 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 CRLS1Q9UJA2 301 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 COL1A2P08123 1366 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 CKMP06732 381 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 RGS4P49798 205 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 FAM83EQ2M2I3 478 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 EEF1DP3Q658K8 133 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 UBE2OQ9C0C9 1292 aaKnown RBP17.1■□□□□ 0.33
SCN3B-202ENST00000392770 ZNF212Q9UDV6 495 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 VANGL2Q9ULK5 521 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 CCT8L1PA6NM43 557 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 SRP72O76094 671 aaKnown RBP17.1■□□□□ 0.33
SCN3B-202ENST00000392770 C15orf59Q2T9L4 293 aaPredicted RBP17.1■□□□□ 0.33
SCN3B-202ENST00000392770 SPDYAQ5MJ70 313 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 ZNF662Q6ZS27 426 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 STRA8Q7Z7C7 330 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 RAB42Q8N4Z0 105 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 SGF29Q96ES7 293 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 SLC25A13Q9UJS0 675 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 PCDHB12Q9Y5F1 795 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 CDY1Q9Y6F8 540 aa17.1■□□□□ 0.33
SCN3B-202ENST00000392770 ZNF197O14709 1029 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 RALBP11234 206 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 RAD23BP54727 409 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 ZACNQ401N2 412 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 TMCO4Q5TGY1 634 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 PRPF39Q86UA1 669 aaKnown RBP17.09■□□□□ 0.33
SCN3B-202ENST00000392770 LPPQ93052 612 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 MRPL9Q9BYD2 267 aaKnown RBP17.09■□□□□ 0.33
SCN3B-202ENST00000392770 ULBP1Q9BZM6 244 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 AARSP49588 968 aaKnown RBP eCLIP17.09■□□□□ 0.33
SCN3B-202ENST00000392770 SLC26A11Q86WA9 606 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 TMA16Q96EY4 203 aaKnown RBP17.09■□□□□ 0.33
SCN3B-202ENST00000392770 FAM84AQ96KN4 292 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 C10orf88Q9H8K7 445 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 SLC24A2Q9UI40 661 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 RNF225M0QZC1 329 aaPredicted RBP17.09■□□□□ 0.33
SCN3B-202ENST00000392770 CHUKO15111 745 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 KLHL2O95198 593 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 HNRNPH3P31942 346 aaKnown RBP17.09■□□□□ 0.33
SCN3B-202ENST00000392770 CRYBB1P53674 252 aaPredicted RBP17.09■□□□□ 0.33
SCN3B-202ENST00000392770 TFAP2DQ7Z6R9 452 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.09■□□□□ 0.33
SCN3B-202ENST00000392770 VPS28Q9UK41 221 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 ATRNL1Q5VV63 1379 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 TRIM66O15016 1216 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 ENDOD1O94919 500 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 YWHAQP27348 245 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 TUBP50607 506 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 MRNIPQ6NTE8 343 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 DDI1Q8WTU0 396 aa17.09■□□□□ 0.33
SCN3B-202ENST00000392770 UROC1Q96N76 676 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms