RNA–Protein interactions for RNA: ENST00000375661.5

LSM2-208, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM2, Length 876 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-208ENST00000375661 BDNFP23560 247 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 TIE1P35590 1138 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 GRIA2P42262 883 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 FMO5P49326 533 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 MXI1P50539 228 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 KCNH2Q12809 1159 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 TRPC3Q13507 836 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 CCDC142Q17RM4 750 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 DUOXA1Q1HG43 343 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 LRSAM1Q6UWE0 723 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 SLC36A4Q6YBV0 504 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 TRMT11Q7Z4G4 463 aaKnown RBP12.86□□□□□ -0.35
LSM2-208ENST00000375661 TTC30AQ86WT1 665 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 CREBRFQ8IUR6 639 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 FAM114A1Q8IWE2 563 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 TMEFF1Q8IYR6 380 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 HDDC3Q8N4P3 179 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 MYCBPAPQ8TBZ2 947 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 KBTBD7Q8WVZ9 684 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 RLN3Q8WXF3 142 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 SEMA4DQ92854 862 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 ELMO3Q96BJ8 720 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 HPDLQ96IR7 371 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 C8orf48Q96LL4 319 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 SLITRK1Q96PX8 696 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 RNF38Q9H0F5 515 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 CBX8Q9HC52 389 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 CRTAC1Q9NQ79 661 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 TMEM74BQ9NUR3 256 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 MBD1Q9UIS9 605 aaPredicted RBP12.86□□□□□ -0.35
LSM2-208ENST00000375661 SLC6A14Q9UN76 642 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 COQ4Q9Y3A0 265 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.86□□□□□ -0.35
LSM2-208ENST00000375661 CPQQ9Y646 472 aa12.86□□□□□ -0.35
LSM2-208ENST00000375661 E2F8A0AVK6 867 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 KCNJ18B7U540 433 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 PMM2O15305 246 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 HCRTO43612 131 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 HYAL3O43820 417 aaPredicted RBP12.85□□□□□ -0.35
LSM2-208ENST00000375661 AFPP02771 609 aaKnown RBP12.85□□□□□ -0.35
LSM2-208ENST00000375661 SERPINF2P08697 491 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 ADH5P11766 374 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 LMO2P25791 158 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 EEF1GP26641 437 aaKnown RBP12.85□□□□□ -0.35
LSM2-208ENST00000375661 ATICP31939 592 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 PTGER3P43115 390 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 MAPK8P45983 427 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 MTIF2P46199 727 aaKnown RBP12.85□□□□□ -0.35
LSM2-208ENST00000375661 SLC6A11P48066 632 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 ATXN3P54252 364 aaPredicted RBP12.85□□□□□ -0.35
LSM2-208ENST00000375661 ZNF445P59923 1031 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 USP46P62068 366 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 PSMC1P62191 440 aaKnown RBP12.85□□□□□ -0.35
LSM2-208ENST00000375661 CYP27A1Q02318 531 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 GAD2Q05329 585 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 KCNJ12Q14500 433 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 TCP11X2Q5H9J9 407 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 RHBDF2Q6PJF5 856 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 NUDT18Q6ZVK8 323 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 OVCA2Q8WZ82 227 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 PCED1BQ96HM7 432 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 VRTNQ9H8Y1 702 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 ARHGEF4Q9NR80 690 aa12.85□□□□□ -0.35
LSM2-208ENST00000375661 TCRBV21S2A2A0A5A6 115 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 ANTXRLA6NF34 631 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 SMTNL1A8MU46 457 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 OPHN1O60890 802 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 ADAM23O75077 832 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 TACC1O75410 805 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 ASS1P00966 412 aaKnown RBP12.84□□□□□ -0.35
LSM2-208ENST00000375661 PIK3CAP42336 1068 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 SIM1P81133 766 aaPredicted RBP12.84□□□□□ -0.35
LSM2-208ENST00000375661 GFPT1Q06210 699 aaPredicted RBP12.84□□□□□ -0.35
LSM2-208ENST00000375661 TAF10Q12962 218 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 KRT31Q15323 416 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 MAN2A1Q16706 1144 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 ZNF423Q2M1K9 1284 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 SGSM1Q2NKQ1 1148 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 MIIPQ5JXC2 388 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 SPOPLQ6IQ16 392 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 APTXQ7Z2E3 356 aaKnown RBP12.84□□□□□ -0.35
LSM2-208ENST00000375661 C12orf40Q86WS4 652 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 PGBD3Q8N328 593 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 PHTF2Q8N3S3 785 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 FBXL13Q8NEE6 735 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 PDZD8Q8NEN9 1154 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 HMGB4Q8WW32 186 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 TUBGCP2Q9BSJ2 902 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 ELOVL4Q9GZR5 314 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 APOBEC3GQ9HC16 384 aaKnown RBP12.84□□□□□ -0.35
LSM2-208ENST00000375661 RAB20Q9NX57 234 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 CFAP97Q9P2B7 532 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 LHX6Q9UPM6 363 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 ADAMTS20P59510 1910 aa12.84□□□□□ -0.35
LSM2-208ENST00000375661 IGF2RP11717 2491 aa12.83□□□□□ -0.36
LSM2-208ENST00000375661 F8VP50 259 aa12.83□□□□□ -0.36
LSM2-208ENST00000375661 P4HA2O15460 535 aa12.83□□□□□ -0.36
LSM2-208ENST00000375661 HOXC11O43248 304 aaPredicted RBP12.83□□□□□ -0.36
LSM2-208ENST00000375661 ZNF217O75362 1048 aa12.83□□□□□ -0.36
LSM2-208ENST00000375661 RTN3O95197 1032 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms