RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 FAM189A1O60320 539 aa21.9■■□□□ 1.1
UPF3A-202ENST00000375299 OATP04181 439 aa21.9■■□□□ 1.1
UPF3A-202ENST00000375299 PABPC4LP0CB38 370 aaKnown RBP21.9■■□□□ 1.1
UPF3A-202ENST00000375299 XIAPP98170 497 aa21.9■■□□□ 1.1
UPF3A-202ENST00000375299 MSLNQ13421 630 aaPredicted RBP21.9■■□□□ 1.1
UPF3A-202ENST00000375299 C1orf228Q6PIY5 440 aa21.9■■□□□ 1.1
UPF3A-202ENST00000375299 UNC5AQ6ZN44 842 aa21.9■■□□□ 1.1
UPF3A-202ENST00000375299 ZBTB33Q86T24 672 aa21.9■■□□□ 1.1
UPF3A-202ENST00000375299 NME8Q8N427 588 aa21.9■■□□□ 1.1
UPF3A-202ENST00000375299 SLC4A11Q8NBS3 891 aa21.9■■□□□ 1.1
UPF3A-202ENST00000375299 APOL6Q9BWW8 343 aa21.9■■□□□ 1.1
UPF3A-202ENST00000375299 KLHL4Q9C0H6 718 aa21.9■■□□□ 1.1
UPF3A-202ENST00000375299 SMYD3Q9H7B4 428 aa21.9■■□□□ 1.1
UPF3A-202ENST00000375299 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.9■■□□□ 1.1
UPF3A-202ENST00000375299 HMX2A2RU54 273 aa21.89■■□□□ 1.1
UPF3A-202ENST00000375299 OPHN1O60890 802 aa21.89■■□□□ 1.1
UPF3A-202ENST00000375299 KLHL2O95198 593 aa21.89■■□□□ 1.1
UPF3A-202ENST00000375299 LSAMPQ13449 338 aa21.89■■□□□ 1.1
UPF3A-202ENST00000375299 DBN1Q16643 649 aa21.89■■□□□ 1.1
UPF3A-202ENST00000375299 RABGAP1LQ5R372 815 aa21.89■■□□□ 1.1
UPF3A-202ENST00000375299 LPCAT4Q643R3 524 aa21.89■■□□□ 1.1
UPF3A-202ENST00000375299 PPP1R14CQ8TAE6 165 aa21.89■■□□□ 1.1
UPF3A-202ENST00000375299 JADE3Q92613 823 aa21.89■■□□□ 1.1
UPF3A-202ENST00000375299 RTP4Q96DX8 246 aa21.89■■□□□ 1.1
UPF3A-202ENST00000375299 CDHR1Q96JP9 859 aa21.89■■□□□ 1.1
UPF3A-202ENST00000375299 STN1Q9H668 368 aaKnown RBP21.89■■□□□ 1.1
UPF3A-202ENST00000375299 ASNSD1Q9NWL6 643 aa21.89■■□□□ 1.1
UPF3A-202ENST00000375299 SLC15A5A6NIM6 579 aa21.89■■□□□ 1.09
UPF3A-202ENST00000375299 TTLL13PA6NNM8 815 aa21.89■■□□□ 1.09
UPF3A-202ENST00000375299 CSDE1O75534 798 aaKnown RBP21.89■■□□□ 1.09
UPF3A-202ENST00000375299 TOM1L1O75674 476 aa21.89■■□□□ 1.09
UPF3A-202ENST00000375299 HIRAP54198 1017 aaPredicted RBP21.89■■□□□ 1.09
UPF3A-202ENST00000375299 CCNIQ14094 377 aa21.89■■□□□ 1.09
UPF3A-202ENST00000375299 GRM2Q14416 872 aa21.89■■□□□ 1.09
UPF3A-202ENST00000375299 LRRC36Q1X8D7 754 aa21.89■■□□□ 1.09
UPF3A-202ENST00000375299 MROH9Q5TGP6 573 aa21.89■■□□□ 1.09
UPF3A-202ENST00000375299 PIWIL2Q8TC59 973 aaKnown RBP21.89■■□□□ 1.09
UPF3A-202ENST00000375299 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.89■■□□□ 1.09
UPF3A-202ENST00000375299 SLC26A7Q8TE54 656 aa21.89■■□□□ 1.09
UPF3A-202ENST00000375299 SLC7A3Q8WY07 619 aa21.89■■□□□ 1.09
UPF3A-202ENST00000375299 LRRC39Q96DD0 335 aa21.89■■□□□ 1.09
UPF3A-202ENST00000375299 KLC2Q9H0B6 622 aa21.89■■□□□ 1.09
UPF3A-202ENST00000375299 ETNK2Q9NVF9 386 aa21.89■■□□□ 1.09
UPF3A-202ENST00000375299 ADAMTS6Q9UKP5 1117 aa21.89■■□□□ 1.09
UPF3A-202ENST00000375299 FER1L6Q2WGJ9 1857 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 FAM159BA6NKW6 160 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 SERPINB9P50453 376 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 CNTN2Q02246 1040 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 CAPSQ13938 189 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 RALGPS1Q5JS13 557 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 ZPBP2Q6X784 338 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 ADGRF2Q8IZF7 708 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 ZNF778Q96MU6 729 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 UBE2OQ9C0C9 1292 aaKnown RBP21.88■■□□□ 1.09
UPF3A-202ENST00000375299 ZNF302Q9NR11 478 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 ITGA11Q9UKX5 1188 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 DNAJC16Q9Y2G8 782 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 PDLIM1O00151 329 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 L1CAMP32004 1257 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 MAGEA6P43360 314 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 COPAP53621 1224 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 AQP4P55087 323 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 SH3BGRP55822 239 aaPredicted RBP21.88■■□□□ 1.09
UPF3A-202ENST00000375299 FASTKD1Q53R41 847 aaKnown RBP21.88■■□□□ 1.09
UPF3A-202ENST00000375299 POU5F2Q8N7G0 328 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 GSDMBQ8TAX9 411 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 NSUN6Q8TEA1 469 aaKnown RBP21.88■■□□□ 1.09
UPF3A-202ENST00000375299 NAT14Q8WUY8 206 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 MCRS1Q96EZ8 462 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 XYLT2Q9H1B5 865 aa21.88■■□□□ 1.09
UPF3A-202ENST00000375299 PARP14Q460N5 1801 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 ADCY3O60266 1144 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 TOP3BO95985 862 aaKnown RBP21.87■■□□□ 1.09
UPF3A-202ENST00000375299 APRTP07741 180 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 ETS2P15036 469 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 RBL1P28749 1068 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 GRIA2P42262 883 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 EPHB1P54762 984 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 CXCL9Q07325 125 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 PGM2L1Q6PCE3 622 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 TRMT10BQ6PF06 316 aaKnown RBP21.87■■□□□ 1.09
UPF3A-202ENST00000375299 CYP4V2Q6ZWL3 525 aaPredicted RBP21.87■■□□□ 1.09
UPF3A-202ENST00000375299 NIM1KQ8IY84 436 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 GDPD5Q8WTR4 605 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 OPTNQ96CV9 577 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 RNF157Q96PX1 679 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 TCHPQ9BT92 498 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 APOBEC2Q9Y235 224 aaKnown RBP21.87■■□□□ 1.09
UPF3A-202ENST00000375299 MAFBQ9Y5Q3 323 aaPredicted RBP21.87■■□□□ 1.09
UPF3A-202ENST00000375299 ITM2AO43736 263 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 LYPLA1O75608 230 aaPredicted RBP21.87■■□□□ 1.09
UPF3A-202ENST00000375299 ZBED1O96006 694 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 PEX2P28328 305 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 RAP1GAPP47736 663 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 RPL26P61254 145 aaKnown RBP21.87■■□□□ 1.09
UPF3A-202ENST00000375299 IRX4P78413 519 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 TFAMQ00059 246 aaKnown RBP21.87■■□□□ 1.09
UPF3A-202ENST00000375299 BTKQ06187 659 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 SURF1Q15526 300 aa21.87■■□□□ 1.09
UPF3A-202ENST00000375299 LRRC23Q53EV4 343 aaPredicted RBP21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms