RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 CDY2AQ9Y6F7 541 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 CNTNAP2Q9UHC6 1331 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 MAPK13O15264 365 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 CLDN3O15551 220 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 PIP5K1CO60331 668 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 CD4P01730 458 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 TRIM49P0CI25 452 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 TRIM49CP0CI26 452 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 HARSP12081 509 aaKnown RBP3.82□□□□□ -1.8
MCF2-202ENST00000370573 COL6A1P12109 1028 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 CD247P20963 164 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 THPOP40225 353 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 VAMP7P51809 220 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 GFRA1P56159 465 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 APBA1Q02410 837 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 DSG1Q02413 1049 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 EGR3Q06889 387 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 CYP24A1Q07973 514 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 PPP3CAQ08209 521 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 CCDC173Q0VFZ6 552 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 GPNMBQ14956 572 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 ZRSR2Q15696 482 aaKnown RBP3.82□□□□□ -1.8
MCF2-202ENST00000370573 MLANAQ16655 118 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 TMEM95Q3KNT9 176 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 FILIP1LQ4L180 1135 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 UBXN11Q5T124 520 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 ZNF618Q5T7W0 954 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 MPZL3Q6UWV2 235 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 CATSPER4Q7RTX7 472 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.82□□□□□ -1.8
MCF2-202ENST00000370573 FAM228AQ86W67 206 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 THNSL1Q8IYQ7 743 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 GPD1LQ8N335 351 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 TMEM145Q8NBT3 493 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 VPS37AQ8NEZ2 397 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 ANKRD20A12PQ8NF67 263 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 PARD3BQ8TEW8 1205 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 CCDC127Q96BQ5 260 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 KIRREL1Q96J84 757 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 LRGUKQ96M69 825 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 ERGIC2Q96RQ1 377 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 CRACR2AQ9BSW2 395 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 TCHPQ9BT92 498 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 CXCL16Q9H2A7 254 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 TRIT1Q9H3H1 467 aaKnown RBP3.82□□□□□ -1.8
MCF2-202ENST00000370573 AGO3Q9H9G7 860 aaKnown RBP3.82□□□□□ -1.8
MCF2-202ENST00000370573 TCF7L1Q9HCS4 588 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 CASS4Q9NQ75 786 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 TOPORSQ9NS56 1045 aaPredicted RBP3.82□□□□□ -1.8
MCF2-202ENST00000370573 CPSF3Q9UKF6 684 aaKnown RBP3.82□□□□□ -1.8
MCF2-202ENST00000370573 SIK3Q9Y2K2 1263 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 FRMD4BQ9Y2L6 1034 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 SPEF1Q9Y4P9 236 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 PCDHA11Q9Y5I1 949 aa3.82□□□□□ -1.8
MCF2-202ENST00000370573 A0A1W2PQC6 194 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 ZNF233A6NK53 670 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 LRRIQ3A6PVS8 624 aaPredicted RBP3.81□□□□□ -1.8
MCF2-202ENST00000370573 PES1O00541 588 aaKnown RBP3.81□□□□□ -1.8
MCF2-202ENST00000370573 EPHB6O15197 1021 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 OGTO15294 1046 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 NOL4O94818 638 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 AFPP02771 609 aaKnown RBP3.81□□□□□ -1.8
MCF2-202ENST00000370573 C8AP07357 584 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 MCF2P10911 925 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 CKBP12277 381 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 GDNFP39905 211 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 MATR3P43243 847 aaKnown RBP eCLIP3.81□□□□□ -1.8
MCF2-202ENST00000370573 SCNN1BP51168 640 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 OSTNP61366 133 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 BFSP1Q12934 665 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 LPIN1Q14693 890 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 NOLC1Q14978 699 aaKnown RBP eCLIP3.81□□□□□ -1.8
MCF2-202ENST00000370573 PSMD6Q15008 389 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 SYCP1Q15431 976 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 CLEC16AQ2KHT3 1053 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 CBWD6Q4V339 395 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 DCAF17Q5H9S7 520 aaPredicted RBP3.81□□□□□ -1.8
MCF2-202ENST00000370573 CBWD3Q5JTY5 395 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 FBXO47Q5MNV8 452 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 CBWD5Q5RIA9 395 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 SPECC1LQ69YQ0 1117 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 KCNT2Q6UVM3 1135 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 SLC39A5Q6ZMH5 540 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 INTS8Q75QN2 995 aaKnown RBP3.81□□□□□ -1.8
MCF2-202ENST00000370573 CCDC186Q7Z3E2 898 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 RSPH3Q86UC2 560 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 TSPYL5Q86VY4 417 aaPredicted RBP3.81□□□□□ -1.8
MCF2-202ENST00000370573 FAM126BQ8IXS8 530 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 DRC7Q8IY82 874 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 MYRIPQ8NFW9 859 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 OR2W6PQ8NHA6 318 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 ANP32BQ92688 251 aaKnown RBP3.81□□□□□ -1.8
MCF2-202ENST00000370573 MAGEB10Q96LZ2 347 aaPredicted RBP3.81□□□□□ -1.8
MCF2-202ENST00000370573 ZNF830Q96NB3 372 aaPredicted RBP3.81□□□□□ -1.8
MCF2-202ENST00000370573 EIF2AQ9BY44 585 aaKnown RBP3.81□□□□□ -1.8
MCF2-202ENST00000370573 MCOLN1Q9GZU1 580 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 PDE11AQ9HCR9 933 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 SPTLC3Q9NUV7 552 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 SAMD15Q9P1V8 674 aa3.81□□□□□ -1.8
MCF2-202ENST00000370573 ST3GAL5Q9UNP4 418 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms