RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 CLCN4P51793 760 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 SOX4Q06945 474 aaPredicted RBP9.56□□□□□ -0.88
UPF2-202ENST00000357604 MAPK8IP2Q13387 824 aaPredicted RBP9.56□□□□□ -0.88
UPF2-202ENST00000357604 GRM3Q14832 879 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 EOGTQ5NDL2 527 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 C3orf20Q8ND61 904 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 LINC01599Q8WXQ3 324 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 IRX2Q9BZI1 471 aaPredicted RBP9.56□□□□□ -0.88
UPF2-202ENST00000357604 MARCH5Q9NX47 278 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 TRMT1Q9NXH9 659 aaKnown RBP9.56□□□□□ -0.88
UPF2-202ENST00000357604 NOL4O94818 638 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 CALCOCO2Q13137 446 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 PPP1R15BQ5SWA1 713 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 FAM46CQ5VWP2 391 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 GPR161Q8N6U8 529 aaKnown RBP9.55□□□□□ -0.88
UPF2-202ENST00000357604 GSDMBQ8TAX9 411 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 TRMT2BQ96GJ1 504 aaKnown RBP9.55□□□□□ -0.88
UPF2-202ENST00000357604 PHF7Q9BWX1 381 aaPredicted RBP9.55□□□□□ -0.88
UPF2-202ENST00000357604 DPEP3Q9H4B8 488 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 VPS28Q9UK41 221 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 MYH9P35579 1960 aaKnown RBP9.55□□□□□ -0.88
UPF2-202ENST00000357604 GDI1P31150 447 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 CYP4F8P98187 520 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 MIIPQ5JXC2 388 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 KIAA0319Q5VV43 1072 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 DENND1BQ6P3S1 775 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 C11orf74Q86VG3 221 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 DEFB106AQ8N104 65 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 SLC30A5Q8TAD4 765 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 FAM172AQ8WUF8 416 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 SMPD4Q9NXE4 827 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 DEKP35659 375 aaKnown RBP9.55□□□□□ -0.88
UPF2-202ENST00000357604 DMC1Q14565 340 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 PDK1Q15118 436 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 ITPRIPL2Q3MIP1 535 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 GPR149Q86SP6 731 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 UBALD2Q8IYN6 164 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 ZSCAN18Q8TBC5 510 aaPredicted RBP9.55□□□□□ -0.88
UPF2-202ENST00000357604 P3H4Q92791 437 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 BTN2A3PQ96KV6 586 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 BBS2Q9BXC9 721 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 RETREG1Q9H6L5 497 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 C1QTNF3-AMACRE9PGA6 284 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 O00370 1275 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 CEP104O60308 925 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 CDH6P55285 790 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 ZBTB6Q15916 424 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 KAZNQ674X7 775 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 TRAF7Q6Q0C0 670 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 C4orf22Q6V702 233 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 FAM183BPQ6ZVS7 135 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 MCOLN2Q8IZK6 566 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 ZNF516Q92618 1163 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 CD101Q93033 1021 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 DEC1Q9P2X7 70 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 IRAK3Q9Y616 596 aa9.55□□□□□ -0.88
UPF2-202ENST00000357604 A0A1W2PRU2 124 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 MYBPHLA2RUH7 354 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 LRRC10BA6NIK2 292 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 E5RJQ4 531 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 EPCAMP16422 314 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 MAPK8P45983 427 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 ERMARDQ5T6L9 678 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 SDHAF4Q5VUM1 108 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 OSTM1Q86WC4 334 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 DENND1CQ8IV53 801 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 LRRC8AQ8IWT6 810 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 ATXN2LQ8WWM7 1075 aaKnown RBP9.54□□□□□ -0.88
UPF2-202ENST00000357604 SEMA4DQ92854 862 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 C1QTNF7Q9BXJ2 289 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 GANQ9H2C0 597 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 MTRF1LQ9UGC7 380 aaKnown RBP9.54□□□□□ -0.88
UPF2-202ENST00000357604 PPP2R2CQ9Y2T4 447 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 FAM169AQ9Y6X4 670 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 A0A0A6YYK5 440 aaPredicted RBP9.54□□□□□ -0.88
UPF2-202ENST00000357604 TBL1XO60907 577 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 ERVFC1P60507 584 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 DGKKQ5KSL6 1271 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 EDEM1Q92611 657 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 ZDHHC4Q9NPG8 344 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 TDP1Q9NUW8 608 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 RNF14Q9UBS8 474 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 COMMD10Q9Y6G5 202 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 IKBKGQ9Y6K9 419 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 RLFQ13129 1914 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 ZSCAN5CA6NGD5 496 aaPredicted RBP9.54□□□□□ -0.88
UPF2-202ENST00000357604 ADH5P11766 374 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 TCP1P17987 556 aaKnown RBP9.54□□□□□ -0.88
UPF2-202ENST00000357604 HSPA9P38646 679 aaKnown RBP9.54□□□□□ -0.88
UPF2-202ENST00000357604 MAP9Q49MG5 647 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 LRRC49Q8IUZ0 686 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 ATL2Q8NHH9 583 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 PCSK1NQ9UHG2 260 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 RAD54BQ9Y620 910 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 CPQQ9Y646 472 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 LCHNA4D1U4 455 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 CTAGE15A4D2H0 777 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 SIGLEC16A6NMB1 481 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 IGSF6O95976 241 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 CTAGE8P0CG41 777 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms