RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 SH3BP5LQ7L8J4 393 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 BRSK2Q8IWQ3 736 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 MPP4Q96JB8 637 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 NCDNQ9UBB6 729 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 MID2Q9UJV3 735 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 TSPAN16Q9UKR8 245 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 FAM135BQ49AJ0 1406 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 ASAP2O43150 1006 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 KLHL41O60662 606 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 TGM2P21980 687 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 IL10P22301 178 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 RPL10AP62906 217 aaKnown RBP7.57□□□□□ -1.2
VPS13A-202ENST00000357409 ERVK-9P63128 1117 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 ERVK-24P63145 666 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 MMRN1Q13201 1228 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 STRA8Q7Z7C7 330 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 NT5DC4Q86YG4 428 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 UTP15Q8TED0 518 aaKnown RBP7.57□□□□□ -1.2
VPS13A-202ENST00000357409 SLC20A1Q8WUM9 679 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 PTPN18Q99952 460 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 LPIN3Q9BQK8 851 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 GTPBP2Q9BX10 602 aaKnown RBP7.57□□□□□ -1.2
VPS13A-202ENST00000357409 STATHP02808 62 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 ATP6V1B2P21281 511 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 GABRR2P28476 465 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 SSTR1P30872 391 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 MRPS15P82914 257 aaKnown RBP7.57□□□□□ -1.2
VPS13A-202ENST00000357409 PRKG2Q13237 762 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 PCBP2Q15366 365 aaKnown RBP eCLIP7.57□□□□□ -1.21e-8■■■■■ 38.2
VPS13A-202ENST00000357409 KCT2Q8NC54 265 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 DNAJC1Q96KC8 554 aaKnown RBP7.57□□□□□ -1.2
VPS13A-202ENST00000357409 CISHQ9NSE2 258 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 TXLNGQ9NUQ3 528 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 CAB39Q9Y376 341 aaPredicted RBP7.57□□□□□ -1.2
VPS13A-202ENST00000357409 MAPKBP1O60336 1514 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 CYP11B2P19099 503 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 DPYDQ12882 1025 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 NFYCQ13952 458 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 RFFLQ8WZ73 363 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 TMPRSS4Q9NRS4 437 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 DYRK1BQ9Y463 629 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 NPC1L1Q9UHC9 1359 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 KRT20P35900 424 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 FBXO33Q7Z6M2 555 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 GHDCQ8N2G8 530 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 SLC5A5Q92911 643 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 ERP27Q96DN0 273 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 MAGEF1Q9HAY2 307 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 YBX3P16989 372 aaKnown RBP eCLIP7.57□□□□□ -1.2
VPS13A-202ENST00000357409 FGFR3P22607 806 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 DUSP4Q13115 394 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 CUL2Q13617 745 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 BYSLQ13895 437 aaKnown RBP7.57□□□□□ -1.2
VPS13A-202ENST00000357409 TREML2Q5T2D2 321 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 FBXO36Q8NEA4 188 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 EPS8L3Q8TE67 593 aaKnown RBP7.57□□□□□ -1.2
VPS13A-202ENST00000357409 SUSD6Q92537 303 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 PANX2Q96RD6 677 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 KLHL25Q9H0H3 589 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 TBC1D3DA0A087WVF3 549 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 TBC1D3IA0A087WXS9 549 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 TBC1D3EA0A087X179 549 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 TBC1D3KA0A087X1G2 549 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 TBC1D3FA6NER0 549 aaPredicted RBP7.57□□□□□ -1.2
VPS13A-202ENST00000357409 MEI4A8MW99 385 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 TBC1D3LB9A6J9 549 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 AP3B1O00203 1094 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 ENTPD3O75355 529 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 TBC1D3HP0C7X1 549 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 PYGMP11217 842 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 KCNK10P57789 538 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 OTUD4Q01804 1114 aaKnown RBP7.57□□□□□ -1.2
VPS13A-202ENST00000357409 FSCN1Q16658 493 aaKnown RBP7.57□□□□□ -1.2
VPS13A-202ENST00000357409 TBC1D3GQ6DHY5 549 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 TBC1D3CQ6IPX1 549 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 MPZL3Q6UWV2 235 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 GLT6D1Q7Z4J2 308 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 TBC1D3Q8IZP1 549 aaPredicted RBP7.57□□□□□ -1.2
VPS13A-202ENST00000357409 ZIM3Q96PE6 472 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 EMILIN2Q9BXX0 1053 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 GPAMQ9HCL2 828 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 CCDC167Q9P0B6 97 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 PCDH10Q9P2E7 1040 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 ZNF112Q9UJU3 913 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 UBQLN1Q9UMX0 589 aaKnown RBP7.57□□□□□ -1.2
VPS13A-202ENST00000357409 SNX10Q9Y5X0 201 aa7.57□□□□□ -1.2
VPS13A-202ENST00000357409 AMHP03971 560 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 SRGNP10124 158 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 ITPKBP27987 946 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 RANBP1P43487 201 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 PSEN2P49810 448 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 HYAL2Q12891 473 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 ALCAMQ13740 583 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 PIGKQ92643 395 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 EME1Q96AY2 570 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 OSBPL3Q9H4L5 887 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 PCDH12Q9NPG4 1184 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 KLHL1Q9NR64 748 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 ADAM21Q9UKJ8 722 aa7.56□□□□□ -1.2
VPS13A-202ENST00000357409 JCADQ9P266 1359 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms