RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 RERGLQ9H628 205 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 DMAP1Q9NPF5 467 aaPredicted RBP20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 CROTQ9UKG9 612 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 ZMYND8Q9ULU4 1186 aaPredicted RBP20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 FAM237BA0A1B0GVD1 139 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 ARP10275 920 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 GARTP22102 1010 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 GRIK1P39086 918 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 ATP6AP1LQ52LC2 224 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 TMEM139Q8IV31 216 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 FAM81AQ8TBF8 368 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 MOSPD1Q9UJG1 213 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 MAFGO15525 162 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 MUTP22033 750 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 SLC25A3Q00325 362 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 NRF1Q16656 503 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 ARMCX4Q5H9R4 360 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 ACTL7BQ9Y614 415 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 TNPO2O14787 897 aaKnown RBP20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 ZSCAN5DPP0CG00 497 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 ETS2P15036 469 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 PRKCIP41743 596 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 IL5RAQ01344 420 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 RDM1Q8NG50 284 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 PHF21AQ96BD5 680 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 CATSPERBQ9H7T0 1116 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 CNTNAP4Q9C0A0 1308 aa20.09■□□□□ 0.81
CCDC88B-202ENST00000356786 OGTO15294 1046 aa20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 RAD51Q06609 339 aa20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 CSHL1Q14406 222 aa20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 MIIPQ5JXC2 388 aa20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 OTOAQ7RTW8 1153 aa20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 SEMA6AQ9H2E6 1030 aa20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 DDIT4Q9NX09 232 aa20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 MPP6Q9NZW5 540 aa20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 SMIM31A0A1B0GVY4 71 aa20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 ASNA1O43681 348 aa20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 PARNO95453 639 aaKnown RBP20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 GP5P40197 560 aa20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 RPL5P46777 297 aaKnown RBP20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 DRG2P55039 364 aaKnown RBP20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 CYP24A1Q07973 514 aa20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 STKLD1Q8NE28 680 aa20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 RXFP2Q8WXD0 754 aa20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 UNKQ9C0B0 810 aaKnown RBP20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 UBE2OQ9C0C9 1292 aaKnown RBP20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 CEP44Q9C0F1 390 aa20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 CISHQ9NSE2 258 aa20.08■□□□□ 0.81
CCDC88B-202ENST00000356786 PWP1Q13610 501 aa20.08■□□□□ 0.8
CCDC88B-202ENST00000356786 PDK3Q15120 406 aa20.08■□□□□ 0.8
CCDC88B-202ENST00000356786 PDK4Q16654 411 aa20.08■□□□□ 0.8
CCDC88B-202ENST00000356786 DALRD3Q5D0E6 543 aaKnown RBP20.08■□□□□ 0.8
CCDC88B-202ENST00000356786 IER5Q5VY09 327 aa20.08■□□□□ 0.8
CCDC88B-202ENST00000356786 CROCCP3Q8IVE0 287 aa20.08■□□□□ 0.8
CCDC88B-202ENST00000356786 PRELID2Q8N945 189 aa20.08■□□□□ 0.8
CCDC88B-202ENST00000356786 DCUN1D1Q96GG9 259 aa20.08■□□□□ 0.8
CCDC88B-202ENST00000356786 LSM8O95777 96 aaKnown RBP20.08■□□□□ 0.8
CCDC88B-202ENST00000356786 KLRK1P26718 216 aa20.08■□□□□ 0.8
CCDC88B-202ENST00000356786 GSTA3Q16772 222 aa20.08■□□□□ 0.8
CCDC88B-202ENST00000356786 DUPD1Q68J44 220 aa20.08■□□□□ 0.8
CCDC88B-202ENST00000356786 HHIPL2Q6UWX4 724 aa20.08■□□□□ 0.8
CCDC88B-202ENST00000356786 DHRSXQ8N5I4 330 aa20.08■□□□□ 0.8
CCDC88B-202ENST00000356786 HPS4Q9NQG7 708 aa20.08■□□□□ 0.8
CCDC88B-202ENST00000356786 PRMT7Q9NVM4 692 aaPredicted RBP20.08■□□□□ 0.8
CCDC88B-202ENST00000356786 TRIM24O15164 1050 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 CYTH3O43739 400 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 HMBSP08397 361 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 ARMC4Q5T2S8 1044 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 PKN3Q6P5Z2 889 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 FAM136AQ96C01 138 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 COQ7Q99807 217 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 RRN3Q9NYV6 651 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 CFAP99D6REC4 459 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 RNF225M0QZC1 329 aaPredicted RBP20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 KCTD19Q17RG1 926 aaPredicted RBP20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 KCNK18Q7Z418 384 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 HDDC2Q7Z4H3 204 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 ADGRA1Q86SQ6 560 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 FAM131BQ86XD5 332 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 OMA1Q96E52 524 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 MAGED4Q96JG8 741 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 PCYOX1Q9UHG3 505 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 POLIQ9UNA4 740 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 LDLRP01130 860 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 HSMCR30P0CW71 290 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 GNL1P36915 607 aaPredicted RBP20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 ETFBP38117 255 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 ITGADQ13349 1161 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 ELMO3Q96BJ8 720 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 BDH2Q9BUT1 245 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 SMARCAD1Q9H4L7 1026 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 H2AFY2Q9P0M6 372 aaPredicted RBP20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 EIF3LQ9Y262 564 aaKnown RBP20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 MRASO14807 208 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 ATP5BP06576 529 aaKnown RBP20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 RBP1P09455 135 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 ALDH1A3P47895 512 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 MRNIPQ6NTE8 343 aa20.07■□□□□ 0.8
CCDC88B-202ENST00000356786 KCNV1Q6PIU1 500 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms