RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 DEFB106AQ8N104 65 aa23.18■■□□□ 1.3
SHMT1-203ENST00000354098 RNF139Q8WU17 664 aa23.18■■□□□ 1.3
SHMT1-203ENST00000354098 ZFRQ96KR1 1074 aaKnown RBP23.18■■□□□ 1.3
SHMT1-203ENST00000354098 ASNSD1Q9NWL6 643 aa23.18■■□□□ 1.3
SHMT1-203ENST00000354098 SFMBT1Q9UHJ3 866 aa23.18■■□□□ 1.3
SHMT1-203ENST00000354098 DNMT3LQ9UJW3 386 aa23.18■■□□□ 1.3
SHMT1-203ENST00000354098 STRIP2Q9ULQ0 834 aa23.18■■□□□ 1.3
SHMT1-203ENST00000354098 ATMINO43313 823 aaPredicted RBP23.17■■□□□ 1.3
SHMT1-203ENST00000354098 HSF2BPO75031 334 aa23.17■■□□□ 1.3
SHMT1-203ENST00000354098 GLI1P08151 1106 aa23.17■■□□□ 1.3
SHMT1-203ENST00000354098 FECHP22830 423 aa23.17■■□□□ 1.3
SHMT1-203ENST00000354098 SLC2A13Q96QE2 648 aa23.17■■□□□ 1.3
SHMT1-203ENST00000354098 METTL5Q9NRN9 209 aaKnown RBP23.17■■□□□ 1.3
SHMT1-203ENST00000354098 RASAL2Q9UJF2 1139 aa23.17■■□□□ 1.3
SHMT1-203ENST00000354098 TMEM59LQ9UK28 342 aa23.17■■□□□ 1.3
SHMT1-203ENST00000354098 ARHGAP26Q9UNA1 814 aa23.17■■□□□ 1.3
SHMT1-203ENST00000354098 TCRBV5S1A1TA0A578 114 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 HEPACAM2A8MVW5 462 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 GOLGA6L6A8MZA4 724 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 CAPN9O14815 690 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 SCNN1AP37088 669 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 GSCP56915 257 aaPredicted RBP23.16■■□□□ 1.3
SHMT1-203ENST00000354098 PITX1P78337 314 aaPredicted RBP23.16■■□□□ 1.3
SHMT1-203ENST00000354098 DCAF6Q58WW2 860 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 PPP1R2P3Q6NXS1 205 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 VITQ6UXI7 678 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 MTSS1LQ765P7 747 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 TADA2BQ86TJ2 420 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 CELF5Q8N6W0 485 aaKnown RBP23.16■■□□□ 1.3
SHMT1-203ENST00000354098 ADAMTS19Q8TE59 1207 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 ELSPBP1Q96BH3 223 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 VCPIP1Q96JH7 1222 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 CDK5RAP1Q96SZ6 601 aaKnown RBP23.16■■□□□ 1.3
SHMT1-203ENST00000354098 KLF16Q9BXK1 252 aaPredicted RBP23.16■■□□□ 1.3
SHMT1-203ENST00000354098 WDR35Q9P2L0 1181 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 SOWAHDA6NJG2 315 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 ZNF263O14978 683 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 ABCB4P21439 1286 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 TRNP1Q6NT89 227 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 BEND5Q7L4P6 421 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 TMEM139Q8IV31 216 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 ADAM32Q8TC27 787 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 SH3RF2Q8TEC5 729 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 WBP2Q969T9 261 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 OLA1Q9NTK5 396 aaKnown RBP23.16■■□□□ 1.3
SHMT1-203ENST00000354098 MARCH2Q9P0N8 246 aa23.16■■□□□ 1.3
SHMT1-203ENST00000354098 NUP210Q8TEM1 1887 aaPredicted RBP23.15■■□□□ 1.3
SHMT1-203ENST00000354098 LEFTY2O00292 366 aa23.15■■□□□ 1.3
SHMT1-203ENST00000354098 DPYSL4O14531 572 aa23.15■■□□□ 1.3
SHMT1-203ENST00000354098 ECI2O75521 394 aa23.15■■□□□ 1.3
SHMT1-203ENST00000354098 FLT3P36888 993 aa23.15■■□□□ 1.3
SHMT1-203ENST00000354098 MSANTD2Q6P1R3 559 aa23.15■■□□□ 1.3
SHMT1-203ENST00000354098 EMC1Q8N766 993 aa23.15■■□□□ 1.3
SHMT1-203ENST00000354098 C3orf20Q8ND61 904 aa23.15■■□□□ 1.3
SHMT1-203ENST00000354098 JOSD2Q8TAC2 188 aa23.15■■□□□ 1.3
SHMT1-203ENST00000354098 DQX1Q8TE96 717 aaKnown RBP23.15■■□□□ 1.3
SHMT1-203ENST00000354098 BAG1Q99933 345 aaPredicted RBP23.15■■□□□ 1.3
SHMT1-203ENST00000354098 SCAMP3O14828 347 aaKnown RBP23.14■■□□□ 1.29
SHMT1-203ENST00000354098 MSI1O43347 362 aaKnown RBP23.14■■□□□ 1.29
SHMT1-203ENST00000354098 DAB1O75553 588 aa23.14■■□□□ 1.29
SHMT1-203ENST00000354098 IRF1P10914 325 aa23.14■■□□□ 1.29
SHMT1-203ENST00000354098 GSDMDP57764 484 aa23.14■■□□□ 1.29
SHMT1-203ENST00000354098 GRM2Q14416 872 aa23.14■■□□□ 1.29
SHMT1-203ENST00000354098 MTF1Q14872 753 aa23.14■■□□□ 1.29
SHMT1-203ENST00000354098 TMTC1Q8IUR5 882 aa23.14■■□□□ 1.29
SHMT1-203ENST00000354098 GJD3Q8N144 294 aa23.14■■□□□ 1.29
SHMT1-203ENST00000354098 SLC44A3Q8N4M1 653 aa23.14■■□□□ 1.29
SHMT1-203ENST00000354098 ZNF653Q96CK0 615 aa23.14■■□□□ 1.29
SHMT1-203ENST00000354098 TRIM62Q9BVG3 475 aa23.14■■□□□ 1.29
SHMT1-203ENST00000354098 PACSIN1Q9BY11 444 aa23.14■■□□□ 1.29
SHMT1-203ENST00000354098 THAP2Q9H0W7 228 aa23.14■■□□□ 1.29
SHMT1-203ENST00000354098 IGSF9Q9P2J2 1179 aa23.14■■□□□ 1.29
SHMT1-203ENST00000354098 CNOT8Q9UFF9 292 aaKnown RBP23.14■■□□□ 1.29
SHMT1-203ENST00000354098 SLC12A8A0AV02 714 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 HMBSP08397 361 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 KRT3P12035 628 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 MATKP42679 507 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 GALCP54803 685 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 ZNF77Q15935 545 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 DNAJC24Q6P3W2 148 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 TAC4Q86UU9 113 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 RNF135Q8IUD6 432 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 SELENOOQ9BVL4 669 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 ADAM33Q9BZ11 813 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 KIF9Q9HAQ2 790 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 OBP2AQ9NY56 170 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP23.13■■□□□ 1.29
SHMT1-203ENST00000354098 CFAP97Q9P2B7 532 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 MYO1AQ9UBC5 1043 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 SIGLEC16A6NMB1 481 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 SLC34A2O95436 690 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 TFE3P19532 575 aaPredicted RBP23.13■■□□□ 1.29
SHMT1-203ENST00000354098 NOS2P35228 1153 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 RFC1P35251 1148 aaPredicted RBP23.13■■□□□ 1.29
SHMT1-203ENST00000354098 RPL7AP62424 266 aaKnown RBP23.13■■□□□ 1.29
SHMT1-203ENST00000354098 MAMLD1Q13495 774 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 PPP1R15BQ5SWA1 713 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 PLEKHA7Q6IQ23 1121 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 RAD9BQ6WBX8 426 aa23.13■■□□□ 1.29
SHMT1-203ENST00000354098 MFSD6LQ8IWD5 586 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms