RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.61□□□□□ -0.87
USP4-202ENST00000351842 FANCGO15287 622 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 TSPAN3O60637 253 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 ABLIM3O94929 683 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 KRT10P13645 584 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 HDCP19113 662 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 FECHP22830 423 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 GBP2P32456 591 aaPredicted RBP9.61□□□□□ -0.87
USP4-202ENST00000351842 ZNF252P-AS1Q0IIN9 211 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 TEAD2Q15562 447 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 SLC5A9Q2M3M2 681 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 SCD5Q86SK9 330 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 TAC4Q86UU9 113 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 ITFG1Q8TB96 612 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 FUBP3Q96I24 572 aaKnown RBP eCLIP9.61□□□□□ -0.87
USP4-202ENST00000351842 HSFY1Q96LI6 401 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 POPDC2Q9HBU9 364 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 SAE1Q9UBE0 346 aaPredicted RBP9.61□□□□□ -0.87
USP4-202ENST00000351842 SCINQ9Y6U3 715 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 NLRC5Q86WI3 1866 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 F5H423 210 aaPredicted RBP9.61□□□□□ -0.87
USP4-202ENST00000351842 PRPSAP2O60256 369 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 TRUB2O95900 331 aaKnown RBP9.61□□□□□ -0.87
USP4-202ENST00000351842 RHOP08100 348 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 CD48P09326 243 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 MIPP30301 263 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 ACADSBP45954 432 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 CCDC14Q49A88 953 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 PABPC1LQ4VXU2 614 aaKnown RBP9.61□□□□□ -0.87
USP4-202ENST00000351842 GAREM2Q75VX8 874 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 RHOT2Q8IXI1 618 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 TSGA10Q9BZW7 698 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 RNF38Q9H0F5 515 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 PIGVQ9NUD9 493 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.61□□□□□ -0.87
USP4-202ENST00000351842 MARCH2Q9P0N8 246 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 STIM2Q9P246 746 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 AMFRQ9UKV5 643 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 KIAA1671Q9BY89 1806 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 NUP205Q92621 2012 aa9.61□□□□□ -0.87
USP4-202ENST00000351842 RIOK3O14730 519 aaKnown RBP9.6□□□□□ -0.87
USP4-202ENST00000351842 LILRB3O75022 631 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 HYAL1Q12794 435 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 MMRN1Q13201 1228 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 RPS6KA1Q15418 735 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 GPR158Q5T848 1215 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 RFWD3Q6PCD5 774 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 CIR1Q86X95 450 aaPredicted RBP9.6□□□□□ -0.87
USP4-202ENST00000351842 CFAP52Q8N1V2 620 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 CCDC185Q8N715 623 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.6□□□□□ -0.87
USP4-202ENST00000351842 DQX1Q8TE96 717 aaKnown RBP9.6□□□□□ -0.87
USP4-202ENST00000351842 ZFYVE19Q96K21 471 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 GCNAQ96QF7 691 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 C10orf88Q9H8K7 445 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 TLR8Q9NR97 1041 aaKnown RBP9.6□□□□□ -0.87
USP4-202ENST00000351842 BDP1A6H8Y1 2624 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 CTAGE9A4FU28 777 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 TMEM191CA6NGB0 347 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 TNFRSF10BO14763 440 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 HSF2BPO75031 334 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 KRT1P04264 644 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 FYNP06241 537 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 CSH1P0DML2 217 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 CSH2P0DML3 217 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 FOSL2P15408 326 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 IL1R2P27930 398 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 AVPR1AP37288 418 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 SNX16P57768 344 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 ETF1P62495 437 aaKnown RBP9.6□□□□□ -0.87
USP4-202ENST00000351842 TFF2Q03403 129 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 EFHC1Q5JVL4 640 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 TPGS2Q68CL5 300 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 PLEKHA7Q6IQ23 1121 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 TPGS1Q6ZTW0 290 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 CCDC149Q6ZUS6 474 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 TFAP2DQ7Z6R9 452 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 COG1Q8WTW3 980 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 MRPS31Q92665 395 aaKnown RBP9.6□□□□□ -0.87
USP4-202ENST00000351842 MRPL38Q96DV4 380 aaKnown RBP9.6□□□□□ -0.87
USP4-202ENST00000351842 TRIM11Q96F44 468 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 AP1M1Q9BXS5 423 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 FBXO44Q9H4M3 255 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 CNGB3Q9NQW8 809 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 PRDM6Q9NQX0 595 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 DNMT3BQ9UBC3 853 aaKnown RBP9.6□□□□□ -0.87
USP4-202ENST00000351842 FBXW11Q9UKB1 542 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 CCL26Q9Y258 94 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 SSX2IPQ9Y2D8 614 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 DAAM1Q9Y4D1 1078 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 SIGLEC16A6NMB1 481 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 DAPK3O43293 454 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 LRCH4O75427 683 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 CYP1A2P05177 515 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 VIPR2P41587 438 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 CDH6P55285 790 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 SNX1Q13596 522 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 KRT81Q14533 505 aa9.6□□□□□ -0.87
USP4-202ENST00000351842 ZNF268Q14587 947 aaPredicted RBP9.6□□□□□ -0.87
USP4-202ENST00000351842 CA9Q16790 459 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms