RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TSHRP16473 764 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 EIF4BP23588 611 aaKnown RBP23.19■■□□□ 1.3
TRIM28-202ENST00000341753 CDH6P55285 790 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 TFAMQ00059 246 aaKnown RBP23.19■■□□□ 1.3
TRIM28-202ENST00000341753 DLG1Q12959 904 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 STX3Q13277 289 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 MSLNQ13421 630 aaPredicted RBP23.19■■□□□ 1.3
TRIM28-202ENST00000341753 EFHC1Q5JVL4 640 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 TMCO4Q5TGY1 634 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 DCAF15Q66K64 600 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 MARK2Q7KZI7 788 aaKnown RBP23.19■■□□□ 1.3
TRIM28-202ENST00000341753 ST13P4Q8IZP2 240 aaPredicted RBP23.19■■□□□ 1.3
TRIM28-202ENST00000341753 CCDC33Q8N5R6 958 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 FAM172AQ8WUF8 416 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 GGA3Q9NZ52 723 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 SLC17A6Q9P2U8 582 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 USP18Q9UMW8 372 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 HEY1Q9Y5J3 304 aa23.19■■□□□ 1.3
TRIM28-202ENST00000341753 SLFN12LQ6IEE8 588 aa23.18■■□□□ 1.3
TRIM28-202ENST00000341753 ABHD15Q6UXT9 468 aa23.18■■□□□ 1.3
TRIM28-202ENST00000341753 DPH6Q7L8W6 267 aa23.18■■□□□ 1.3
TRIM28-202ENST00000341753 PDSS2Q86YH6 399 aa23.18■■□□□ 1.3
TRIM28-202ENST00000341753 WDR81Q562E7 1941 aa23.18■■□□□ 1.3
TRIM28-202ENST00000341753 SERPINA6P08185 405 aa23.18■■□□□ 1.3
TRIM28-202ENST00000341753 RPS12P25398 132 aaKnown RBP23.18■■□□□ 1.3
TRIM28-202ENST00000341753 CCNFP41002 786 aa23.18■■□□□ 1.3
TRIM28-202ENST00000341753 CDH8P55286 799 aa23.18■■□□□ 1.3
TRIM28-202ENST00000341753 TAZQ16635 292 aa23.18■■□□□ 1.3
TRIM28-202ENST00000341753 CDO1Q16878 200 aa23.18■■□□□ 1.3
TRIM28-202ENST00000341753 EEPD1Q7L9B9 569 aa23.18■■□□□ 1.3
TRIM28-202ENST00000341753 TRIM42Q8IWZ5 723 aa23.18■■□□□ 1.3
TRIM28-202ENST00000341753 ZNF778Q96MU6 729 aa23.18■■□□□ 1.3
TRIM28-202ENST00000341753 TEX13BQ9BXU2 312 aa23.18■■□□□ 1.3
TRIM28-202ENST00000341753 R3HDMLQ9H3Y0 253 aa23.18■■□□□ 1.3
TRIM28-202ENST00000341753 AS3MTQ9HBK9 375 aa23.18■■□□□ 1.3
TRIM28-202ENST00000341753 XAB2Q9HCS7 855 aaKnown RBP23.18■■□□□ 1.3
TRIM28-202ENST00000341753 HMX2A2RU54 273 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 H0YCG3 227 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 ZMPSTE24O75844 475 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 BPGMP07738 259 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 OSTNP61366 133 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 RPL10AP62906 217 aaKnown RBP23.17■■□□□ 1.3
TRIM28-202ENST00000341753 SATL1Q86VE3 508 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 CAND1Q86VP6 1230 aaKnown RBP23.17■■□□□ 1.3
TRIM28-202ENST00000341753 MPP5Q8N3R9 675 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 GPAMQ9HCL2 828 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 DNAJC16Q9Y2G8 782 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 RLFQ13129 1914 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 SDR42E2A6NKP2 422 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 SPDYE16A6NNV3 312 aaPredicted RBP23.17■■□□□ 1.3
TRIM28-202ENST00000341753 F5H423 210 aaPredicted RBP23.17■■□□□ 1.3
TRIM28-202ENST00000341753 LDHAP00338 332 aaKnown RBP23.17■■□□□ 1.3
TRIM28-202ENST00000341753 OSBPP22059 807 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 TRPC3Q13507 836 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 TCHHL1Q5QJ38 904 aaPredicted RBP23.17■■□□□ 1.3
TRIM28-202ENST00000341753 SESTD1Q86VW0 696 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 FRMD8P1Q9BZ68 369 aaPredicted RBP23.17■■□□□ 1.3
TRIM28-202ENST00000341753 ZNF518BQ9C0D4 1074 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 ACAD9Q9H845 621 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 GPATCH2LQ9NWQ4 482 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 ADGRA2Q96PE1 1338 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 SNNO75324 88 aaPredicted RBP23.17■■□□□ 1.3
TRIM28-202ENST00000341753 TRUB2O95900 331 aaKnown RBP23.17■■□□□ 1.3
TRIM28-202ENST00000341753 PROCP04070 461 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 CCNIQ14094 377 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 NOMO1Q15155 1222 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 CATSPERGQ6ZRH7 1159 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 ACAD11Q709F0 780 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 UNC5BQ8IZJ1 945 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 STKLD1Q8NE28 680 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 RDM1Q8NG50 284 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 SLC16A10Q8TF71 515 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 GDPD5Q8WTR4 605 aa23.17■■□□□ 1.3
TRIM28-202ENST00000341753 PARP14Q460N5 1801 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 LOC100653049A0A140TA62 436 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 KRT34O76011 436 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 KCNA4P22459 653 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 RBL1P28749 1068 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 MED21Q13503 144 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 ZNF699Q32M78 642 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 DPY19L2Q6NUT2 758 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 UNC5AQ6ZN44 842 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 XYLT1Q86Y38 959 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 ADGRF2Q8IZF7 708 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 ARHGAP18Q8N392 663 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 DRAXINQ8NBI3 349 aaPredicted RBP23.16■■□□□ 1.3
TRIM28-202ENST00000341753 CMASQ8NFW8 434 aaPredicted RBP23.16■■□□□ 1.3
TRIM28-202ENST00000341753 NMD3Q96D46 503 aaKnown RBP23.16■■□□□ 1.3
TRIM28-202ENST00000341753 ZNF112Q9UJU3 913 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 PACSIN3Q9UKS6 424 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 FKBP6O75344 327 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 GRAP2O75791 330 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 PGM3O95394 542 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 POLR2BP30876 1174 aaKnown RBP23.16■■□□□ 1.3
TRIM28-202ENST00000341753 SERPINB6P35237 376 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 C15orf59Q2T9L4 293 aaPredicted RBP23.16■■□□□ 1.3
TRIM28-202ENST00000341753 KYAT3Q6YP21 454 aaKnown RBP23.16■■□□□ 1.3
TRIM28-202ENST00000341753 PORCNQ9H237 461 aa23.16■■□□□ 1.3
TRIM28-202ENST00000341753 SPAG6O75602 509 aa23.15■■□□□ 1.3
TRIM28-202ENST00000341753 ATG7O95352 703 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms