RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 C10orf88Q9H8K7 445 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 PNPLA8Q9NP80 782 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 TMEM39AQ9NV64 488 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 PLAAQ9Y263 795 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 SF3B1O75533 1304 aaKnown RBP eCLIP13.94□□□□□ -0.184e-8■■□□□ 13.3
HMGB1-202ENST00000339872 NT5C1B-RDH14C9J2C7 533 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 APOL1O14791 398 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 TP73O15350 636 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 IFNB1P01574 187 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 ZSCAN5DPP0CG00 497 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 ETS1P14921 441 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 EIF3EP60228 445 aaKnown RBP13.93□□□□□ -0.18
HMGB1-202ENST00000339872 P3H1Q32P28 736 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 CTXN3Q4LDR2 81 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 C1orf228Q6PIY5 440 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.93□□□□□ -0.18
HMGB1-202ENST00000339872 BHLHA9Q7RTU4 235 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 VSIG1Q86XK7 387 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 GOLGA6L1Q8N7Z2 621 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 ADAM32Q8TC27 787 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 CCHCR1Q8TD31 782 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 P3H4Q92791 437 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 KCTD15Q96SI1 283 aaPredicted RBP13.93□□□□□ -0.18
HMGB1-202ENST00000339872 IZUMO3Q5VZ72 239 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 FUT10Q6P4F1 479 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 BNIPLQ7Z465 357 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 CCDC25Q86WR0 208 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 SCN4BQ8IWT1 228 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 LRRC43Q8N309 656 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 PQLC3Q8N755 202 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 PCDH19Q8TAB3 1148 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 SCAMP5Q8TAC9 235 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 IRGQQ8WZA9 623 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 EDEM1Q92611 657 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 TXLNGYQ9BZA5 131 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 PIGVQ9NUD9 493 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 ANAPC5Q9UJX4 755 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 FZD10Q9ULW2 581 aa13.93□□□□□ -0.18
HMGB1-202ENST00000339872 ZNF638Q14966 1978 aaKnown RBP13.93□□□□□ -0.18
HMGB1-202ENST00000339872 RNF40O75150 1001 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 CLTBP09497 229 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 RBP3P10745 1247 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 SLC5A3P53794 718 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 PMS2P54278 862 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 IKBKEQ14164 716 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 NOMO1Q15155 1222 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 PM20D1Q6GTS8 502 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 ZNF280DQ6N043 979 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 CNKSR3Q6P9H4 555 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 ZC3H18Q86VM9 953 aaKnown RBP13.92□□□□□ -0.18
HMGB1-202ENST00000339872 PYROXD2Q8N2H3 581 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 PLD5Q8N7P1 536 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 BBOF1Q8ND07 529 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 RSAD2Q8WXG1 361 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 FAF2Q96CS3 445 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 PGLYRP2Q96PD5 576 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 TMPRSS4Q9NRS4 437 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 MTMR10Q9NXD2 777 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 HEY1Q9Y5J3 304 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 ZNF487B1APH4 448 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 OPA1O60313 960 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 GALTP07902 379 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 TGM2P21980 687 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 GJA8P48165 433 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 GDF10P55107 478 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 CAV1Q03135 178 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 GPS1Q13098 491 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 NFE2Q16621 373 aaPredicted RBP13.92□□□□□ -0.18
HMGB1-202ENST00000339872 SLC9A4Q6AI14 798 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 RHBDF2Q6PJF5 856 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 TMEM173Q86WV6 379 aaPredicted RBP13.92□□□□□ -0.18
HMGB1-202ENST00000339872 PAWRQ96IZ0 340 aaKnown RBP13.92□□□□□ -0.18
HMGB1-202ENST00000339872 TMEM175Q9BSA9 504 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 FAM204AQ9H8W3 233 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 PCDH9Q9HC56 1237 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 VPS18Q9P253 973 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 USP3Q9Y6I4 520 aa13.92□□□□□ -0.18
HMGB1-202ENST00000339872 COL4A4P53420 1690 aaPredicted RBP13.91□□□□□ -0.18
HMGB1-202ENST00000339872 FGFR3P22607 806 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 ARPP19P56211 112 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 ROR1Q01973 937 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 BSPRYQ5W0U4 402 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 B4GALNT4Q76KP1 1039 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 SCML4Q8N228 414 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 OR2W6PQ8NHA6 318 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 ARMC5Q96C12 935 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 CSPG4P5Q96PW8 444 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 SH3GL2Q99962 352 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 C11orf49Q9H6J7 331 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 DDIT4Q9NX09 232 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 LTBP2Q14767 1821 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 MAP3K6O95382 1288 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 GOT1P17174 413 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 CHKAP35790 457 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 ARL4AP40617 200 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 ELAVL2Q12926 359 aaKnown RBP13.91□□□□□ -0.18
HMGB1-202ENST00000339872 SLMAPQ14BN4 828 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 LRRC26Q2I0M4 334 aa13.91□□□□□ -0.18
HMGB1-202ENST00000339872 DARS2Q6PI48 645 aaKnown RBP13.91□□□□□ -0.18
HMGB1-202ENST00000339872 PSTKQ8IV42 348 aaKnown RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms