RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 FAM187BQ17R55 369 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 IMPG1Q17R60 797 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 TPGS2Q68CL5 300 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 C10orf67Q8IYJ2 551 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 C3orf20Q8ND61 904 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 STMN2Q93045 179 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 WNT8BQ93098 351 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 FZD8Q9H461 694 aa10.51□□□□□ -0.73
USP54-201ENST00000339859 AVENQ9NQS1 362 aaPredicted RBP10.51□□□□□ -0.73
USP54-201ENST00000339859 NDUFAB1O14561 156 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 DAB1O75553 588 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 MYO1DO94832 1006 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 RBP3P10745 1247 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 ZACNQ401N2 412 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 ZNF571Q7Z3V5 609 aaPredicted RBP10.5□□□□□ -0.73
USP54-201ENST00000339859 EXD1Q8NHP7 514 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 MCUR1Q96AQ8 359 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 BTBD6Q96KE9 485 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 ZBTB18Q99592 522 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 ACBD6Q9BR61 282 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 IRS2Q9Y4H2 1338 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 RBAK-RBAKDNI3L0D1 243 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 SPAG6O75602 509 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 APODP05090 189 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 DDR2Q16832 855 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 TTC31Q49AM3 519 aaPredicted RBP10.5□□□□□ -0.73
USP54-201ENST00000339859 SPOCD1Q6ZMY3 1216 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 OR5B17Q8NGF7 314 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 INTS9Q9NV88 658 aaKnown RBP10.5□□□□□ -0.73
USP54-201ENST00000339859 CHORDC1Q9UHD1 332 aaPredicted RBP10.5□□□□□ -0.73
USP54-201ENST00000339859 FIS1Q9Y3D6 152 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 FAM47DPA6NHR8 397 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 C1QTNF3-AMACRE9PGA6 284 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 CTIFO43310 598 aaKnown RBP10.5□□□□□ -0.73
USP54-201ENST00000339859 NFATC1O95644 943 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 DUSP4Q13115 394 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 C11orf63Q6NUN7 778 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 EMC1Q8N766 993 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 FAM71BQ8TC56 605 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 LENG9Q96B70 501 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 ELMO2Q96JJ3 720 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 ZNF862O60290 1169 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 TBL1XO60907 577 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 DENND1CQ8IV53 801 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 FAM71DQ8N9W8 422 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 LEMD2Q8NC56 503 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 RAD18Q9NS91 495 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 NR2E1Q9Y466 385 aa10.5□□□□□ -0.73
USP54-201ENST00000339859 F8VP50 259 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 TBC1D4O60343 1298 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 HSPA4LO95757 839 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 WARSP23381 471 aaKnown RBP10.49□□□□□ -0.73
USP54-201ENST00000339859 NR2C2P49116 596 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 RASSF2P50749 326 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 POLR2LP62875 67 aaKnown RBP10.49□□□□□ -0.73
USP54-201ENST00000339859 MON1AQ86VX9 555 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 PPIL6Q8IXY8 311 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 C2orf49Q9BVC5 232 aaPredicted RBP10.49□□□□□ -0.73
USP54-201ENST00000339859 UBA2Q9UBT2 640 aaPredicted RBP10.49□□□□□ -0.73
USP54-201ENST00000339859 MARC1Q5VT66 337 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 PDE12Q6L8Q7 609 aaKnown RBP10.49□□□□□ -0.73
USP54-201ENST00000339859 DENND1BQ6P3S1 775 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 MYCBPAPQ8TBZ2 947 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 OMDQ99983 421 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 XAB2Q9HCS7 855 aaKnown RBP10.49□□□□□ -0.73
USP54-201ENST00000339859 NT5MQ9NPB1 228 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 CNGB3Q9NQW8 809 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 C20orf96Q9NUD7 363 aaPredicted RBP10.49□□□□□ -0.73
USP54-201ENST00000339859 ITGALP20701 1170 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 SLCO1A2P46721 670 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 SERPINB9P50453 376 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 SLC12A1Q13621 1099 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 CACNA1SQ13698 1873 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 PRPF4O43172 522 aaKnown RBP eCLIP10.49□□□□□ -0.738e-8■■■■□ 24.2
USP54-201ENST00000339859 PMPCBO75439 489 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 OAS2P29728 719 aaKnown RBP10.49□□□□□ -0.73
USP54-201ENST00000339859 TTLL9Q3SXZ7 439 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 FAM183BPQ6ZVS7 135 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 BLOC1S5Q8TDH9 187 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 SRPK1Q96SB4 655 aaKnown RBP10.49□□□□□ -0.73
USP54-201ENST00000339859 ZC3H7BQ9UGR2 993 aaKnown RBP10.49□□□□□ -0.73
USP54-201ENST00000339859 TSR3Q9UJK0 312 aaKnown RBP10.49□□□□□ -0.73
USP54-201ENST00000339859 A0A087X0T9 212 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 HACD1B0YJ81 288 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 ATG7O95352 703 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 FAM228BP0C875 321 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 AAK1Q2M2I8 961 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 HS6ST3Q8IZP7 471 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 MAB21L3Q8N8X9 362 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 CDC26Q8NHZ8 85 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 BADQ92934 168 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 ZFP42Q96MM3 310 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 FAM129AQ9BZQ8 928 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 GPR88Q9GZN0 384 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 GOLGA2P5Q9HBQ8 144 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 EML4Q9HC35 981 aaKnown RBP10.49□□□□□ -0.73
USP54-201ENST00000339859 TLR9Q9NR96 1032 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 CALCOCO1Q9P1Z2 691 aa10.49□□□□□ -0.73
USP54-201ENST00000339859 HDAC4P56524 1084 aa10.48□□□□□ -0.73
USP54-201ENST00000339859 C2CD6Q53TS8 623 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms