RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 DNALI1O14645 258 aaPredicted RBP23.34■■□□□ 1.33
PDLIM2-203ENST00000339162 RIPK2O43353 540 aa23.34■■□□□ 1.33
PDLIM2-203ENST00000339162 ZBED1O96006 694 aa23.34■■□□□ 1.33
PDLIM2-203ENST00000339162 CYP2F1P24903 491 aa23.34■■□□□ 1.33
PDLIM2-203ENST00000339162 IFRD2Q12894 506 aaPredicted RBP23.34■■□□□ 1.33
PDLIM2-203ENST00000339162 NOMO1Q15155 1222 aa23.34■■□□□ 1.33
PDLIM2-203ENST00000339162 DPYSL2Q16555 572 aa23.34■■□□□ 1.33
PDLIM2-203ENST00000339162 SLC7A14Q8TBB6 771 aa23.34■■□□□ 1.33
PDLIM2-203ENST00000339162 SLC2A13Q96QE2 648 aa23.34■■□□□ 1.33
PDLIM2-203ENST00000339162 NCAPGQ9BPX3 1015 aa23.34■■□□□ 1.33
PDLIM2-203ENST00000339162 CNGB3Q9NQW8 809 aa23.34■■□□□ 1.33
PDLIM2-203ENST00000339162 PCDHB8Q9UN66 801 aa23.34■■□□□ 1.33
PDLIM2-203ENST00000339162 APOL1O14791 398 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 ACSL3O95573 720 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 NCAM1P13591 858 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 TSPY1Q01534 308 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 CAV1Q03135 178 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 PPARDQ03181 441 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 KRT71Q3SY84 523 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 DARS2Q6PI48 645 aaKnown RBP23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 NT5C3BQ969T7 300 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 B3GALT6Q96L58 329 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 PCDH9Q9HC56 1237 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 PIGVQ9NUD9 493 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 KANSL3Q9P2N6 904 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 OGDHLQ9ULD0 1010 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 FBXO21O94952 628 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 SPDYCQ5MJ68 293 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 BBOF1Q8ND07 529 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 SCAMP5Q8TAC9 235 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 CCHCR1Q8TD31 782 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 ATP6V1G3Q96LB4 118 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 ZNF670Q9BS34 389 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 FRMD8P1Q9BZ68 369 aaPredicted RBP23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 TPX2Q9ULW0 747 aaKnown RBP23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 STAP1Q9ULZ2 295 aa23.33■■□□□ 1.33
PDLIM2-203ENST00000339162 SMIM23A6NLE4 172 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 H7C0C1 242 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 TADA2AO75478 443 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 TYMPP19971 482 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 ATP5OP48047 213 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 LMAN1P49257 510 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 DEUP1Q05D60 604 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 BHLHA9Q7RTU4 235 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 CEP57Q86XR8 500 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 SEPT8Q92599 483 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 NRDE2Q9H7Z3 1164 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 DMAP1Q9NPF5 467 aaPredicted RBP23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 CWC15Q9P013 229 aaKnown RBP23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 PITPNM1O00562 1244 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 NUDT17P0C025 328 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 GOT1P17174 413 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 RPL22P35268 128 aaKnown RBP23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 PBX3P40426 434 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 ROR1Q01973 937 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 KYNUQ16719 465 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 SLC39A12Q504Y0 691 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 SLC9A4Q6AI14 798 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 FZD10Q9ULW2 581 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 MFHAS1Q9Y4C4 1052 aa23.32■■□□□ 1.32
PDLIM2-203ENST00000339162 GOLGA8MH3BSY2 632 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 CAPN15O75808 1086 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 LTFP02788 710 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 RDXP35241 583 aaKnown RBP23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 HP1BP3Q5SSJ5 553 aaPredicted RBP23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 DEFB128Q7Z7B8 93 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 SPATA2LQ8IUW3 424 aaPredicted RBP23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 STKLD1Q8NE28 680 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 EXOC4Q96A65 974 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 CASD1Q96PB1 797 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 CSPG4P5Q96PW8 444 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 HIPK3Q9H422 1215 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 LRFN2Q9ULH4 789 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 TLDC2A0PJX2 215 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 AMPD1P23109 780 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 GBE1Q04446 702 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 GAD2Q05329 585 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 BNIPLQ7Z465 357 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 FAF2Q96CS3 445 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 ETNK2Q9NVF9 386 aa23.31■■□□□ 1.32
PDLIM2-203ENST00000339162 SCN5AQ14524 2016 aa23.3■■□□□ 1.32
PDLIM2-203ENST00000339162 NT5C1B-RDH14C9J2C7 533 aa23.3■■□□□ 1.32
PDLIM2-203ENST00000339162 AMHP03971 560 aa23.3■■□□□ 1.32
PDLIM2-203ENST00000339162 PAX3P23760 479 aa23.3■■□□□ 1.32
PDLIM2-203ENST00000339162 CYP2C18P33260 490 aa23.3■■□□□ 1.32
PDLIM2-203ENST00000339162 GRIK1P39086 918 aa23.3■■□□□ 1.32
PDLIM2-203ENST00000339162 CTCFP49711 727 aaPredicted RBP23.3■■□□□ 1.32
PDLIM2-203ENST00000339162 RNASEH2BQ5TBB1 312 aaKnown RBP23.3■■□□□ 1.32
PDLIM2-203ENST00000339162 NETO2Q8NC67 525 aa23.3■■□□□ 1.32
PDLIM2-203ENST00000339162 C9orf72Q96LT7 481 aa23.3■■□□□ 1.32
PDLIM2-203ENST00000339162 RBM15Q96T37 977 aaKnown RBP eCLIP23.3■■□□□ 1.32
PDLIM2-203ENST00000339162 ANLNQ9NQW6 1124 aa23.3■■□□□ 1.32
PDLIM2-203ENST00000339162 ABI2Q9NYB9 513 aaPredicted RBP23.3■■□□□ 1.32
PDLIM2-203ENST00000339162 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 DCDC2CA8MYV0 355 aa23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 SLCO1A2P46721 670 aa23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 ATP1A2P50993 1020 aa23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 SLC10A2Q12908 348 aaPredicted RBP23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 MAPRE1Q15691 268 aaKnown RBP23.29■■□□□ 1.32
PDLIM2-203ENST00000339162 SYCP2LQ5T4T6 812 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms