RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 SEZ6Q53EL9 994 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 FASTKD1Q53R41 847 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 CC2D2BQ6DHV5 1058 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 APOBEC3HQ6NTF7 200 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 ANO5Q75V66 913 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 UNC5BQ8IZJ1 945 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 ARFGAP1Q8N6T3 406 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 AGR3Q8TD06 166 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 DIS3LQ8TF46 1054 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 ACSS2Q9NR19 701 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 APOBEC2Q9Y235 224 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 SCINQ9Y6U3 715 aa13.93□□□□□ -0.18
CCDC88C-201ENST00000331194 XPO1O14980 1071 aaKnown RBP13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 CDH2P19022 906 aaPredicted RBP13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 MMRN1Q13201 1228 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 XKR9Q5GH70 373 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 WDR44Q5JSH3 913 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 DNAJC24Q6P3W2 148 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 SH3BP5LQ7L8J4 393 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 PHF13Q86YI8 300 aaPredicted RBP13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 PQLC1Q8N2U9 271 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 FBXW8Q8N3Y1 598 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 ACTRT2Q8TDY3 377 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 PPP1R36Q96LQ0 422 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 BTBD9Q96Q07 612 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 KCNH7Q9NS40 1196 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 DMTF1Q9Y222 760 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 SH3GLB1Q9Y371 365 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 TMEM221A6NGB7 291 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 TMX2-CTNND1H3BSU7 103 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 HNRNPDLO14979 420 aaKnown RBP13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 DENRO43583 198 aaKnown RBP13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 STRNO43815 780 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 CAPN15O75808 1086 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 VNN1O95497 513 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 GH2P01242 217 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 HDAC4P56524 1084 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 EIF3EP60228 445 aaKnown RBP13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 KRT81Q14533 505 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 RTKN2Q8IZC4 609 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 LILRA2Q8N149 483 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 EMC1Q8N766 993 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 ZNF606Q8WXB4 792 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 ERLEC1Q96DZ1 483 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 MOCOSQ96EN8 888 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 PFDN4Q9NQP4 134 aa13.92□□□□□ -0.18
CCDC88C-201ENST00000331194 CNTNAP2Q9UHC6 1331 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 P4HBP07237 508 aaKnown RBP13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 MMP8P22894 467 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 RFC1P35251 1148 aaPredicted RBP13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 ENTPD1P49961 510 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 LPIN1Q14693 890 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 CRY2Q49AN0 593 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 SLC44A4Q53GD3 710 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 RFX6Q8HWS3 928 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 KCTD17Q8N5Z5 321 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 TTLL6Q8N841 843 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 PPP4R1Q8TF05 950 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 CCDC17Q96LX7 622 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 OXCT2Q9BYC2 517 aaPredicted RBP13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 ZC3H12CQ9C0D7 883 aaKnown RBP13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 NUB1Q9Y5A7 615 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 RBBP6Q7Z6E9 1792 aaKnown RBP13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 ADAMTSL1Q8N6G6 1762 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 PIK3R2O00459 728 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 CASQ2O14958 399 aaPredicted RBP13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 KRT37O76014 449 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 FBXO21O94952 628 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 GSRP00390 522 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 IDH3AP50213 366 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 WASHC5Q12768 1159 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 TEDDM1Q5T9Z0 273 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 ZNF677Q86XU0 584 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 PIWIL2Q8TC59 973 aaKnown RBP13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 FNDC8Q8TC99 324 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 HSPH1Q92598 858 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 AKT1S1Q96B36 256 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 FAF2Q96CS3 445 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 FAF1Q9UNN5 650 aaPredicted RBP13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 CROCCQ5TZA2 2017 aa13.91□□□□□ -0.18
CCDC88C-201ENST00000331194 E9PBE3 544 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 AIM2O14862 343 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 KLHL41O60662 606 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 DGKIO75912 1065 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 PKNOX1P55347 436 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 CUL2Q13617 745 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 NRF1Q16656 503 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 ZBTB41Q5SVQ8 909 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 WDR75Q8IWA0 830 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 JOSD2Q8TAC2 188 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 SPATA18Q8TC71 538 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 CALN1Q9BXU9 219 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 MRPS26Q9BYN8 205 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 TIMMDC1Q9NPL8 285 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 KMT5AQ9NQR1 393 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 RAB6BQ9NRW1 208 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 HOMER2Q9NSB8 354 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 TBC1D22BQ9NU19 505 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 THAP1Q9NVV9 213 aa13.9□□□□□ -0.18
CCDC88C-201ENST00000331194 SLC9A2Q9UBY0 812 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms