RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ZNF624Q9P2J8 865 aaPredicted RBP14.68□□□□□ -0.06
COL7A1-201ENST00000328333 TMA7Q9Y2S6 64 aaKnown RBP14.68□□□□□ -0.06
COL7A1-201ENST00000328333 USP6P35125 1406 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 MGAT4DA6NG13 374 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 EIF2AK2P19525 551 aaKnown RBP14.68□□□□□ -0.06
COL7A1-201ENST00000328333 NOS3P29474 1203 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 RPL19P84098 196 aaKnown RBP14.68□□□□□ -0.06
COL7A1-201ENST00000328333 IL5RAQ01344 420 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 VAC14Q08AM6 782 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 TYSND1Q2T9J0 566 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 TUBA3EQ6PEY2 450 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 ZNF341Q9BYN7 854 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 SLC7A5P2Q9GIP4 190 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 USP42Q9H9J4 1324 aaKnown RBP14.68□□□□□ -0.06
COL7A1-201ENST00000328333 NLRP1Q9C000 1473 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 SLC16A2P36021 539 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 LRRC17Q8N6Y2 441 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 CASKIN2Q8WXE0 1202 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 MAGEB10Q96LZ2 347 aaPredicted RBP14.68□□□□□ -0.06
COL7A1-201ENST00000328333 PPP1R10Q96QC0 940 aaKnown RBP14.68□□□□□ -0.06
COL7A1-201ENST00000328333 PNKPQ96T60 521 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 CHP1Q99653 195 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 RFC5P40937 340 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 PTENP60484 403 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 QPRTQ15274 297 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 MIER2Q8N344 545 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 ZNF669Q96BR6 464 aaPredicted RBP14.68□□□□□ -0.06
COL7A1-201ENST00000328333 PAFAH2Q99487 392 aa14.68□□□□□ -0.06
COL7A1-201ENST00000328333 VIL1P09327 827 aaKnown RBP14.67□□□□□ -0.06
COL7A1-201ENST00000328333 PLA2G4FQ68DD2 849 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 IL17REQ8NFR9 667 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 NSMCE2Q96MF7 247 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 NIF3L1Q9GZT8 377 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 COA1Q9GZY4 146 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 EHD3Q9NZN3 535 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 LOC100653049A0A140TA62 436 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 MSLNQ13421 630 aaPredicted RBP14.67□□□□□ -0.06
COL7A1-201ENST00000328333 PDPRQ8NCN5 879 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 RAG1P15918 1043 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 GPD1P21695 349 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 TRAP1Q12931 704 aaKnown RBP14.67□□□□□ -0.06
COL7A1-201ENST00000328333 PDPK2PQ6A1A2 396 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 CCDC185Q8N715 623 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 EPS8L3Q8TE67 593 aaKnown RBP14.67□□□□□ -0.06
COL7A1-201ENST00000328333 SIK2Q9H0K1 926 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 ZBTB22O15209 634 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 TFE3P19532 575 aaPredicted RBP14.67□□□□□ -0.06
COL7A1-201ENST00000328333 DNAJB2P25686 324 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 ZNF846Q147U1 533 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 SLC25A24Q6NUK1 477 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 IZUMO1Q8IYV9 350 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 FAM71DQ8N9W8 422 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 LRRC40Q9H9A6 602 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 WBP11Q9Y2W2 641 aaKnown RBP14.67□□□□□ -0.06
COL7A1-201ENST00000328333 PLA2R1Q13018 1463 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 GSTM1P09488 218 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 TSPAN19P0C672 248 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 FEN1P39748 380 aaKnown RBP14.67□□□□□ -0.06
COL7A1-201ENST00000328333 STARP49675 285 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 VPS72Q15906 364 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 ACCSLQ4AC99 568 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 DDX17Q92841 729 aaKnown RBP14.67□□□□□ -0.06
COL7A1-201ENST00000328333 NEK6Q9HC98 313 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 HEG1Q9ULI3 1381 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 BCLAF3A2AJT9 711 aaKnown RBP14.67□□□□□ -0.06
COL7A1-201ENST00000328333 NR5A2O00482 541 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 ADORA2BP29275 332 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 PTPN7P35236 360 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 UBXN2AP68543 259 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 MAPK11Q15759 364 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 DCAF4L1Q3SXM0 396 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 BTN2A1Q7KYR7 527 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 DEPDC4Q8N2C3 294 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 SKA1Q96BD8 255 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 ZNF408Q9H9D4 720 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 HAT1O14929 419 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 LARGE1O95461 756 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 ATP6V1C1P21283 382 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 CRABP2P29373 138 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 PGM2Q96G03 612 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 ADPRHL2Q9NX46 363 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 RAB21Q9UL25 225 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 DUSP12Q9UNI6 340 aa14.67□□□□□ -0.06
COL7A1-201ENST00000328333 PRR29P0C7W0 189 aa14.66□□□□□ -0.06
COL7A1-201ENST00000328333 NAA30Q147X3 362 aaPredicted RBP14.66□□□□□ -0.06
COL7A1-201ENST00000328333 DHRSXQ8N5I4 330 aa14.66□□□□□ -0.06
COL7A1-201ENST00000328333 GPAMQ9HCL2 828 aa14.66□□□□□ -0.06
COL7A1-201ENST00000328333 RPS6KA6Q9UK32 745 aa14.66□□□□□ -0.06
COL7A1-201ENST00000328333 V9GYQ6 96 aa14.66□□□□□ -0.06
COL7A1-201ENST00000328333 NFYCQ13952 458 aa14.66□□□□□ -0.06
COL7A1-201ENST00000328333 FEZF2Q8TBJ5 459 aa14.66□□□□□ -0.06
COL7A1-201ENST00000328333 PROX1Q92786 737 aa14.66□□□□□ -0.06
COL7A1-201ENST00000328333 KCNB2Q92953 911 aa14.66□□□□□ -0.06
COL7A1-201ENST00000328333 KIF12Q96FN5 646 aa14.66□□□□□ -0.06
COL7A1-201ENST00000328333 FLT1P17948 1338 aa14.66□□□□□ -0.06
COL7A1-201ENST00000328333 WFS1O76024 890 aa14.66□□□□□ -0.06
COL7A1-201ENST00000328333 FARP2O94887 1054 aaPredicted RBP14.66□□□□□ -0.06
COL7A1-201ENST00000328333 FAUP35544 74 aaKnown RBP14.66□□□□□ -0.06
COL7A1-201ENST00000328333 ACTRT2Q8TDY3 377 aa14.66□□□□□ -0.06
COL7A1-201ENST00000328333 RACGAP1Q9H0H5 632 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms