RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 KLRG1Q96E93 195 aa13.36□□□□□ -0.27
HMGCS1-201ENST00000325110 TUBB6Q9BUF5 446 aa13.36□□□□□ -0.27
HMGCS1-201ENST00000325110 ACSS2Q9NR19 701 aa13.36□□□□□ -0.27
HMGCS1-201ENST00000325110 DPP3Q9NY33 737 aa13.36□□□□□ -0.27
HMGCS1-201ENST00000325110 KANSL3Q9P2N6 904 aa13.36□□□□□ -0.27
HMGCS1-201ENST00000325110 PACSIN3Q9UKS6 424 aa13.36□□□□□ -0.27
HMGCS1-201ENST00000325110 MRPL42Q9Y6G3 142 aaKnown RBP13.36□□□□□ -0.27
HMGCS1-201ENST00000325110 WDR27A2RRH5 827 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 HCRTO43612 131 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 USP1O94782 785 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 AMPD1P23109 780 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 MAP3K10Q02779 954 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 KCNT2Q6UVM3 1135 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 LRRC74BQ6ZQY2 392 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 RGS9BPQ6ZS82 235 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 TRIM42Q8IWZ5 723 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 HACE1Q8IYU2 909 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 NIPA2Q8N8Q9 360 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 MAB21L3Q8N8X9 362 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 DNAAF3Q8N9W5 541 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 SLC26A7Q8TE54 656 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 RNPEPQ9H4A4 650 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 IFT122Q9HBG6 1241 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 SMYD2Q9NRG4 433 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 DNAJC16Q9Y2G8 782 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 USP12O75317 370 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 PSMG1O95456 288 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 ARL4AP40617 200 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 ATXN3P54252 364 aaPredicted RBP13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 NME3Q13232 169 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 VGLL4Q14135 290 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 PPP1R26Q5T8A7 1209 aaPredicted RBP13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 MOB2Q70IA6 237 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 CDKL2Q92772 493 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 PRR5-ARHGAP8B1AHC4 643 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 TBX10O75333 385 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 CILPO75339 1184 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 PDE5AO76074 875 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 APOEP02649 317 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 TYK2P29597 1187 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 GPD2P43304 727 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 SARNPP82979 210 aaKnown RBP13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 ARHGAP8P85298 464 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 BLMHQ13867 455 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 PMF1Q6P1K2 205 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 UNC5AQ6ZN44 842 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 APOBEC3FQ8IUX4 373 aaKnown RBP13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 RBM15BQ8NDT2 890 aaKnown RBP13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 CMASQ8NFW8 434 aaPredicted RBP13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 FBXO27Q8NI29 283 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 PGBD4Q96DM1 585 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 PGLYRP2Q96PD5 576 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 EBF4Q9BQW3 602 aa13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 SPATS2LQ9NUQ6 558 aaKnown RBP13.35□□□□□ -0.27
HMGCS1-201ENST00000325110 TCRBV5S1A1TA0A578 114 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 NFKBIEO00221 500 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 ZMPSTE24O75844 475 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 IL18RAPO95256 599 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 TFE3P19532 575 aaPredicted RBP13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 ATP6V1C1P21283 382 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 RBP5P82980 135 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 SLC25A3Q00325 362 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 TARBP2Q15633 366 aaKnown RBP13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 KIZQ2M2Z5 673 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 BOLA3Q53S33 107 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 ANO7Q6IWH7 933 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 PCDH19Q8TAB3 1148 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 CLEC4CQ8WTT0 213 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 NDRG1Q92597 394 aaKnown RBP13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 USP6NLQ92738 828 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 ZBED3Q96IU2 234 aaPredicted RBP13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 GPR20Q99678 358 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 PCDH18Q9HCL0 1135 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 PRMT7Q9NVM4 692 aaPredicted RBP13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 KLK14Q9P0G3 267 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 BARX2Q9UMQ3 279 aaPredicted RBP13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 APOBEC2Q9Y235 224 aaKnown RBP13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 SPDYE5A6NIY4 337 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 METTL18O95568 372 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 THEMIS2Q5TEJ8 643 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 CDKL3Q8IVW4 592 aaPredicted RBP13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 SCUBE1Q8IWY4 988 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.34□□□□□ -0.272e-10■■■■□ 25.6
HMGCS1-201ENST00000325110 GBP5Q96PP8 586 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 LGMNQ99538 433 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 LHX5Q9H2C1 402 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 SMARCAD1Q9H4L7 1026 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 NDE1Q9NXR1 346 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 TEX264Q9Y6I9 313 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 B4GALT4O60513 344 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 SPAG6O75602 509 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 WFS1O76024 890 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 SLC34A1Q06495 639 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 PEX6Q13608 980 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 Q3C1V9 767 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 FASTKD1Q53R41 847 aaKnown RBP13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 APOL2Q9BQE5 337 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 FERMT1Q9BQL6 677 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 AP4E1Q9UPM8 1137 aa13.34□□□□□ -0.27
HMGCS1-201ENST00000325110 COL4A5P29400 1685 aa13.33□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms