RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 H0YHG0 523 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 AGPSO00116 658 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 PDE2AO00408 941 aaPredicted RBP13.31□□□□□ -0.28
DDX39A-202ENST00000324340 RNF8O76064 485 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 FYNP06241 537 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 ATF2P15336 505 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 RPL17P18621 184 aaKnown RBP13.31□□□□□ -0.28
DDX39A-202ENST00000324340 SLC8A1P32418 973 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 NOS2P35228 1153 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 GGCXP38435 758 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 DNA2P51530 1060 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 ARPP19P56211 112 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 ACTN3Q08043 901 aaPredicted RBP13.31□□□□□ -0.28
DDX39A-202ENST00000324340 DAB2IPQ5VWQ8 1189 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 SCN4BQ8IWT1 228 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 KATNAL2Q8IYT4 538 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 NUP93Q8N1F7 819 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 TTC9BQ8N6N2 239 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 NOA1Q8NC60 698 aaKnown RBP13.31□□□□□ -0.28
DDX39A-202ENST00000324340 CFAP57Q96MR6 1250 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 BATF3Q9NR55 127 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 MRPL17Q9NRX2 175 aaKnown RBP13.31□□□□□ -0.28
DDX39A-202ENST00000324340 AFF4Q9UHB7 1163 aaKnown RBP13.31□□□□□ -0.28
DDX39A-202ENST00000324340 USTQ9Y2C2 406 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 CAPN7Q9Y6W3 813 aa13.31□□□□□ -0.28
DDX39A-202ENST00000324340 C2CD2LO14523 706 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 TNRC18O15417 2968 aaPredicted RBP13.3□□□□□ -0.28
DDX39A-202ENST00000324340 RASSF9O75901 435 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 ENDOD1O94919 500 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 LTFP02788 710 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 USP17L7P0C7H9 530 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 TCF4P15884 667 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 DESP17661 470 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 PAFAH1B1P43034 410 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 RPL10AP62906 217 aaKnown RBP13.3□□□□□ -0.28
DDX39A-202ENST00000324340 GNGT1P63211 74 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 SHHQ15465 462 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 CLUL1Q15846 466 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 C15orf59Q2T9L4 293 aaPredicted RBP13.3□□□□□ -0.28
DDX39A-202ENST00000324340 SLC25A52Q3SY17 297 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 HFE2Q6ZVN8 426 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 STRADAQ7RTN6 431 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 EGFL6Q8IUX8 553 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 DEFB106AQ8N104 65 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 SCAMP5Q8TAC9 235 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 NDRG1Q92597 394 aaKnown RBP13.3□□□□□ -0.28
DDX39A-202ENST00000324340 CAVIN3Q969G5 261 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 FAM149B1Q96BN6 582 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 MS4A14Q96JA4 679 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 CAPZA3Q96KX2 299 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 RNPC3Q96LT9 517 aaKnown RBP13.3□□□□□ -0.28
DDX39A-202ENST00000324340 NPY6RQ99463 290 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 TRIM62Q9BVG3 475 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 FBXO44Q9H4M3 255 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 SCML2Q9UQR0 700 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 IRAK3Q9Y616 596 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 GREB1Q4ZG55 1949 aa13.3□□□□□ -0.28
DDX39A-202ENST00000324340 GBF1Q92538 1859 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 CEP104O60308 925 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 RTN3O95197 1032 aaPredicted RBP13.29□□□□□ -0.28
DDX39A-202ENST00000324340 RB1P06400 928 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 KRT7P08729 469 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 PYGMP11217 842 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 MIPP30301 263 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 CTNNB1P35222 781 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 TUFMP49411 452 aaKnown RBP13.29□□□□□ -0.28
DDX39A-202ENST00000324340 GPR15P49685 360 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 HDAC4P56524 1084 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 UBE3AQ05086 875 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 DUSP4Q13115 394 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 DDR2Q16832 855 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 HADHQ16836 314 aaKnown RBP13.29□□□□□ -0.28
DDX39A-202ENST00000324340 MGAT5BQ3V5L5 792 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 SH3PXD2AQ5TCZ1 1133 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 FBXW10Q5XX13 1052 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 KDM7AQ6ZMT4 941 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 CYP4V2Q6ZWL3 525 aaPredicted RBP13.29□□□□□ -0.28
DDX39A-202ENST00000324340 EXD1Q8NHP7 514 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 FAM172AQ8WUF8 416 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.29□□□□□ -0.284e-8■■■■■ 36.3
DDX39A-202ENST00000324340 PGAP3Q96FM1 320 aaPredicted RBP13.29□□□□□ -0.28
DDX39A-202ENST00000324340 ADAM33Q9BZ11 813 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 EPN3Q9H201 632 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 KLC4Q9NSK0 619 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 DDX56Q9NY93 547 aaKnown RBP13.29□□□□□ -0.28
DDX39A-202ENST00000324340 RRN3Q9NYV6 651 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 STAP1Q9ULZ2 295 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 USP18Q9UMW8 372 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 SLC27A5Q9Y2P5 690 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 PCDHA11Q9Y5I1 949 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 MYO16Q9Y6X6 1858 aa13.29□□□□□ -0.28
DDX39A-202ENST00000324340 PGRMC1O00264 195 aaKnown RBP13.28□□□□□ -0.28
DDX39A-202ENST00000324340 NDUFAB1O14561 156 aa13.28□□□□□ -0.28
DDX39A-202ENST00000324340 TEX28O15482 410 aa13.28□□□□□ -0.28
DDX39A-202ENST00000324340 TRUB2O95900 331 aaKnown RBP13.28□□□□□ -0.28
DDX39A-202ENST00000324340 EZRP15311 586 aaKnown RBP13.28□□□□□ -0.28
DDX39A-202ENST00000324340 ATF6P18850 670 aa13.28□□□□□ -0.28
DDX39A-202ENST00000324340 TFE3P19532 575 aaPredicted RBP13.28□□□□□ -0.28
DDX39A-202ENST00000324340 IL1R2P27930 398 aa13.28□□□□□ -0.28
DDX39A-202ENST00000324340 LMNB2Q03252 620 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms