RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 UBDO15205 165 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 NAA20P61599 178 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 HSF2Q03933 536 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 SWSAP1Q6NVH7 229 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 MRPL4Q9BYD3 311 aaKnown RBP8.98□□□□□ -0.97
USF3-201ENST00000316407 SLC12A4Q9UP95 1085 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 CCDC189A1A4V9 331 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 USP12O75317 370 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 SH3BGRLO75368 114 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 CRKLP46109 303 aaKnown RBP8.98□□□□□ -0.97
USF3-201ENST00000316407 SEPHS1P49903 392 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 CDK17Q00537 523 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 RHAGQ02094 409 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 FNIP1Q8TF40 1166 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 MNTQ99583 582 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 SLC7A5P2Q9GIP4 190 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 AP5M1Q9H0R1 490 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 TOR4AQ9NXH8 423 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 POLRMTO00411 1230 aaKnown RBP8.98□□□□□ -0.97
USF3-201ENST00000316407 PDHA2P29803 388 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 CBX3Q13185 183 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 QPRTQ15274 297 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 TTMPQ5BVD1 217 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 DNAJC7Q99615 494 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 SLC16A3O15427 465 aaKnown RBP8.98□□□□□ -0.97
USF3-201ENST00000316407 SNX32Q86XE0 403 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 FBXO25Q8TCJ0 367 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 NMRK1Q9NWW6 199 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 ASNSP08243 561 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 NFICP08651 508 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 VIL1P09327 827 aaKnown RBP8.98□□□□□ -0.97
USF3-201ENST00000316407 USF2Q15853 346 aaPredicted RBP8.98□□□□□ -0.97
USF3-201ENST00000316407 FGD3Q5JSP0 725 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 CDHR1Q96JP9 859 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 ZNF302Q9NR11 478 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 GALNT8Q9NY28 637 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 DSG3P32926 999 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 TSPAN18Q96SJ8 248 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 LYVE1Q9Y5Y7 322 aa8.98□□□□□ -0.97
USF3-201ENST00000316407 SNTNA6NMZ2 147 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 MSX2P35548 267 aaPredicted RBP8.97□□□□□ -0.97
USF3-201ENST00000316407 CCR3P51677 355 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 COPZ1P61923 177 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 RAD51Q06609 339 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 MCPH1Q8NEM0 835 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 TBCDQ9BTW9 1192 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 PAK5Q9P286 719 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 PLCL2Q9UPR0 1127 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 MRPL42Q9Y6G3 142 aaKnown RBP8.97□□□□□ -0.97
USF3-201ENST00000316407 A0A087WXM4 84 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 MZT2BQ6NZ67 158 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 TTC23LQ6PF05 361 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 ZNF75CPQ92670 426 aaPredicted RBP8.97□□□□□ -0.97
USF3-201ENST00000316407 MED8Q96G25 268 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 KIAA1586Q9HCI6 787 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 VAV3Q9UKW4 847 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 COMMD3-BMI1R4GMX3 469 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 DENND4BO75064 1496 aaPredicted RBP8.97□□□□□ -0.97
USF3-201ENST00000316407 PIK3CDO00329 1044 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 LDLRP01130 860 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 HIST1H2AGP0C0S8 130 aaPredicted RBP8.97□□□□□ -0.97
USF3-201ENST00000316407 HIST1H2ADP20671 130 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 IL12AP29459 219 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 IDH2P48735 452 aaKnown RBP8.97□□□□□ -0.97
USF3-201ENST00000316407 USP4Q13107 963 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 HIST1H2AHQ96KK5 128 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 DMRTB1Q96MA1 342 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 HIST1H2AJQ99878 128 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 H2AFJQ9BTM1 129 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 IRF1P10914 325 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 MB21D2Q8IYB1 491 aaPredicted RBP8.97□□□□□ -0.97
USF3-201ENST00000316407 BEST2Q8NFU1 509 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 GFM1Q96RP9 751 aaKnown RBP8.97□□□□□ -0.97
USF3-201ENST00000316407 NMRK2Q9NPI5 230 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 TRAPPC3O43617 180 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 HERVK_113P62684 666 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 IRGCQ6NXR0 463 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 TMC2Q8TDI7 906 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 PPP1R10Q96QC0 940 aaKnown RBP8.97□□□□□ -0.97
USF3-201ENST00000316407 UBP1Q9NZI7 540 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 CCDC154A6NI56 674 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 RBP3P10745 1247 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 HAUS6Q7Z4H7 955 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 RHOBTB2Q9BYZ6 727 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 PRRG3Q9BZD7 231 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 RSAD1Q9HA92 442 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 LIMD1Q9UGP4 676 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 ERI2A8K979 691 aaKnown RBP8.97□□□□□ -0.97
USF3-201ENST00000316407 PPEF1O14829 653 aaPredicted RBP8.97□□□□□ -0.97
USF3-201ENST00000316407 ASMTLO95671 621 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 GH2P01242 217 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 PRKCQQ04759 706 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 ZNF605Q86T29 641 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 TMEM47Q9BQJ4 181 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 PLGRKTQ9HBL7 147 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 TFDP3Q5H9I0 405 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 AGAP9Q5VTM2 703 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 CDC73Q6P1J9 531 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 PHF21BQ96EK2 531 aa8.97□□□□□ -0.97
USF3-201ENST00000316407 CCDC115Q96NT0 180 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms