RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 CDO1Q16878 200 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 C15orf59Q2T9L4 293 aaPredicted RBP19■□□□□ 0.63
HMGA1-201ENST00000311487 C3orf20Q8ND61 904 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 SLC35G2Q8TBE7 412 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 MRPS31Q92665 395 aaKnown RBP19■□□□□ 0.63
HMGA1-201ENST00000311487 GOLGA1Q92805 767 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 FGF13Q92913 245 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 GCNAQ96QF7 691 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 POPDC2Q9HBU9 364 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19■□□□□ 0.63
HMGA1-201ENST00000311487 SALL4Q9UJQ4 1053 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 TMEM59LQ9UK28 342 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 CLUHO75153 1309 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 BUB1O43683 1085 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 ZDHHC11BP0C7U3 371 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 CDC25CP30307 473 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 ATXN1P54253 815 aaKnown RBP19■□□□□ 0.63
HMGA1-201ENST00000311487 EFHC1Q5JVL4 640 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 CPNE8Q86YQ8 564 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 GADD45GIP1Q8TAE8 222 aaPredicted RBP19■□□□□ 0.63
HMGA1-201ENST00000311487 VCPIP1Q96JH7 1222 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 CEP295NLQ96MC4 621 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 GKN1Q9NS71 199 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 PARVAQ9NVD7 372 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 EHD2Q9NZN4 543 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 CCL26Q9Y258 94 aa19■□□□□ 0.63
HMGA1-201ENST00000311487 TMEM110-MUSTN1A8MSY1 372 aa18.99■□□□□ 0.63
HMGA1-201ENST00000311487 HDCP19113 662 aa18.99■□□□□ 0.63
HMGA1-201ENST00000311487 GBP2P32456 591 aaPredicted RBP18.99■□□□□ 0.63
HMGA1-201ENST00000311487 ZXDBP98169 803 aa18.99■□□□□ 0.63
HMGA1-201ENST00000311487 NME3Q13232 169 aa18.99■□□□□ 0.63
HMGA1-201ENST00000311487 HECTD3Q5T447 861 aa18.99■□□□□ 0.63
HMGA1-201ENST00000311487 PLEKHA7Q6IQ23 1121 aa18.99■□□□□ 0.63
HMGA1-201ENST00000311487 SLC26A9Q7LBE3 791 aa18.99■□□□□ 0.63
HMGA1-201ENST00000311487 KIF18AQ8NI77 898 aa18.99■□□□□ 0.63
HMGA1-201ENST00000311487 RNF139Q8WU17 664 aa18.99■□□□□ 0.63
HMGA1-201ENST00000311487 RXFP2Q8WXD0 754 aa18.99■□□□□ 0.63
HMGA1-201ENST00000311487 LZTFL1Q9NQ48 299 aa18.99■□□□□ 0.63
HMGA1-201ENST00000311487 MACROD2A1Z1Q3 448 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 SIGLEC16A6NMB1 481 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 HSF2BPO75031 334 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 TUBB4AP04350 444 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 CYP1A2P05177 515 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 CKMP06732 381 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 IRF1P10914 325 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 PDGFRAP16234 1089 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 KCNQ1P51787 676 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 ZDHHC17Q8IUH5 632 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 IRGQQ8WZA9 623 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 RIPOR3Q96MK2 946 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 MYADMQ96S97 322 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 GOLPH3Q9H4A6 298 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 ABCC13Q9NSE7 274 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 COMMD8Q9NX08 183 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 RASAL2Q9UJF2 1139 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 ANAPC1Q9H1A4 1944 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 NCANO14594 1321 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 MBTPS2O43462 519 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 TMEM253P0C7T8 217 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 RALAP11233 206 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 NOP2P46087 812 aaKnown RBP18.98■□□□□ 0.63
HMGA1-201ENST00000311487 NAP1L1P55209 391 aaKnown RBP18.98■□□□□ 0.63
HMGA1-201ENST00000311487 KRT83P78385 493 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 PPP1R15BQ5SWA1 713 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 SYT10Q6XYQ8 523 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 NPAS3Q8IXF0 933 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 PDZD8Q8NEN9 1154 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.98■□□□□ 0.63
HMGA1-201ENST00000311487 WDR35Q9P2L0 1181 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 ANAPC7Q9UJX3 599 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 HYOU1Q9Y4L1 999 aa18.98■□□□□ 0.63
HMGA1-201ENST00000311487 OBSL1O75147 1896 aa18.97■□□□□ 0.63
HMGA1-201ENST00000311487 ZNF197O14709 1029 aa18.97■□□□□ 0.63
HMGA1-201ENST00000311487 OAS1P00973 400 aaKnown RBP18.97■□□□□ 0.63
HMGA1-201ENST00000311487 MYBL1P10243 752 aa18.97■□□□□ 0.63
HMGA1-201ENST00000311487 MBL2P11226 248 aaPredicted RBP18.97■□□□□ 0.63
HMGA1-201ENST00000311487 VAV2P52735 878 aa18.97■□□□□ 0.63
HMGA1-201ENST00000311487 CCDC14Q49A88 953 aa18.97■□□□□ 0.63
HMGA1-201ENST00000311487 ZNF564Q8TBZ8 553 aaPredicted RBP18.97■□□□□ 0.63
HMGA1-201ENST00000311487 WBP2Q969T9 261 aa18.97■□□□□ 0.63
HMGA1-201ENST00000311487 TRIM11Q96F44 468 aa18.97■□□□□ 0.63
HMGA1-201ENST00000311487 RPGRIP1Q96KN7 1286 aa18.97■□□□□ 0.63
HMGA1-201ENST00000311487 TBCBQ99426 244 aa18.97■□□□□ 0.63
HMGA1-201ENST00000311487 GOLGA6L9A6NEM1 432 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 C2CD4BA6NLJ0 364 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 SART1O43290 800 aaKnown RBP18.96■□□□□ 0.63
HMGA1-201ENST00000311487 PRAMEF12O95522 483 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 IL9P15248 144 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 ATP5C1P36542 298 aaKnown RBP18.96■□□□□ 0.63
HMGA1-201ENST00000311487 VIPR2P41587 438 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 MATKP42679 507 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 SULT1E1P49888 294 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 ETF1P62495 437 aaKnown RBP18.96■□□□□ 0.63
HMGA1-201ENST00000311487 ZNF252P-AS1Q0IIN9 211 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 ARHGAP15Q53QZ3 475 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 PTCRAQ6ISU1 281 aaPredicted RBP18.96■□□□□ 0.63
HMGA1-201ENST00000311487 TAC4Q86UU9 113 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 SCML4Q8N228 414 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 ARHGAP18Q8N392 663 aa18.96■□□□□ 0.63
HMGA1-201ENST00000311487 ZSCAN18Q8TBC5 510 aaPredicted RBP18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms