RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 GPATCH2LQ9NWQ4 482 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 TWF1Q12792 350 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 FAM98BQ52LJ0 330 aaKnown RBP17.84■□□□□ 0.45
SYNPO-201ENST00000307662 RIPOR1Q6ZS17 1223 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 SLC22A9Q8IVM8 553 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 MCOLN2Q8IZK6 566 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 GPR63Q9BZJ6 419 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 CEP44Q9C0F1 390 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 CEP170BQ9Y4F5 1589 aaPredicted RBP17.84■□□□□ 0.45
SYNPO-201ENST00000307662 PEX1O43933 1283 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 MAPK1P28482 360 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 NCF4Q15080 339 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 DGUOKQ16854 277 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 FASTKD5Q7L8L6 764 aaKnown RBP17.84■□□□□ 0.45
SYNPO-201ENST00000307662 FAM9CQ8IZT9 166 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 FLCNQ8NFG4 579 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 LRRC39Q96DD0 335 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 MUC3BQ9H195 1237 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 HPS4Q9NQG7 708 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 UBAP1Q9NZ09 502 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 CNTNAP4Q9C0A0 1308 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 PCSK1P29120 753 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 CCT8P50990 548 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 ANGPT1Q15389 498 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 NET1Q7Z628 596 aaPredicted RBP17.84■□□□□ 0.45
SYNPO-201ENST00000307662 TAS1R2Q8TE23 839 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 KIAA1257Q9ULG3 409 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 ZNRF3Q9ULT6 936 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 DRG1Q9Y295 367 aaKnown RBP17.84■□□□□ 0.45
SYNPO-201ENST00000307662 RAD54BQ9Y620 910 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 FAM205AQ6ZU69 1335 aa17.83■□□□□ 0.45
SYNPO-201ENST00000307662 ADRA1DP25100 572 aa17.83■□□□□ 0.45
SYNPO-201ENST00000307662 PRKAA2P54646 552 aa17.83■□□□□ 0.45
SYNPO-201ENST00000307662 ILDR1Q86SU0 546 aaPredicted RBP17.83■□□□□ 0.45
SYNPO-201ENST00000307662 PCDHGC5Q9Y5F6 944 aa17.83■□□□□ 0.45
SYNPO-201ENST00000307662 FAM20BO75063 409 aa17.83■□□□□ 0.45
SYNPO-201ENST00000307662 HSMCR30P0CW71 290 aa17.83■□□□□ 0.45
SYNPO-201ENST00000307662 SSTR1P30872 391 aa17.83■□□□□ 0.45
SYNPO-201ENST00000307662 C1QBPQ07021 282 aaKnown RBP17.83■□□□□ 0.45
SYNPO-201ENST00000307662 MAPK11Q15759 364 aa17.83■□□□□ 0.45
SYNPO-201ENST00000307662 CGRRF1Q99675 332 aa17.83■□□□□ 0.45
SYNPO-201ENST00000307662 CACNA2D2Q9NY47 1150 aa17.83■□□□□ 0.45
SYNPO-201ENST00000307662 CORO1CQ9ULV4 474 aaPredicted RBP17.83■□□□□ 0.45
SYNPO-201ENST00000307662 PDE2AO00408 941 aaPredicted RBP17.83■□□□□ 0.44
SYNPO-201ENST00000307662 BAIAP3O94812 1187 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 ZNF682O95780 498 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 SEC23AQ15436 765 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 PKN1Q16512 942 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 PYDC1Q8WXC3 89 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 INTS13Q9NVM9 706 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 SPASTQ9UBP0 616 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 KLHL3Q9UH77 587 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 ADAM30Q9UKF2 790 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 KCNJ2P63252 427 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 HPCAP84074 193 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 PWP1Q13610 501 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 GRTP1Q5TC63 336 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 ADCK2Q7Z695 626 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 ZCCHC9Q8N567 271 aaKnown RBP17.83■□□□□ 0.44
SYNPO-201ENST00000307662 ATG16L2Q8NAA4 619 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 CDRT15Q96T59 188 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 C9orf16Q9BUW7 83 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 KIAA1683Q9H0B3 1180 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 WDCPQ9H6R7 721 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 SLC38A7Q9NVC3 462 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 COMMD3-BMI1R4GMX3 469 aa17.83■□□□□ 0.44
SYNPO-201ENST00000307662 OPLAHO14841 1288 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 TRIM13O60858 407 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 VPS26AO75436 327 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 LDLRP01130 860 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 VAC14Q08AM6 782 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 CSHL1Q14406 222 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 LRRC71Q8N4P6 559 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 CCDC33Q8N5R6 958 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 DLG3Q92796 817 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 SEPHS2Q99611 448 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 C6orf62Q9GZU0 229 aaPredicted RBP17.82■□□□□ 0.44
SYNPO-201ENST00000307662 COPS7BQ9H9Q2 264 aaPredicted RBP17.82■□□□□ 0.44
SYNPO-201ENST00000307662 DYRK4Q9NR20 520 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 TMCC3Q9ULS5 477 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 NCF1BA6NI72 391 aaPredicted RBP17.82■□□□□ 0.44
SYNPO-201ENST00000307662 NCF1CA8MVU1 366 aaPredicted RBP17.82■□□□□ 0.44
SYNPO-201ENST00000307662 KBTBD13C9JR72 458 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 DDX3XO00571 662 aaKnown RBP eCLIP17.82■□□□□ 0.44
SYNPO-201ENST00000307662 PROCP04070 461 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 MLNP12872 115 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 NCF1P14598 390 aaPredicted RBP17.82■□□□□ 0.44
SYNPO-201ENST00000307662 MIER2Q8N344 545 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 C19orf60Q96EN9 201 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 NSMCE2Q96MF7 247 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 POP1Q99575 1024 aaKnown RBP17.82■□□□□ 0.44
SYNPO-201ENST00000307662 MTMR12Q9C0I1 747 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 GPAMQ9HCL2 828 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 KRT84Q9NSB2 600 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 STX7O15400 261 aaKnown RBP17.82■□□□□ 0.44
SYNPO-201ENST00000307662 CYP24A1Q07973 514 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 BLOC1S5Q8TDH9 187 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 RORBQ92753 470 aa17.82■□□□□ 0.44
SYNPO-201ENST00000307662 REXO4Q9GZR2 422 aaKnown RBP17.82■□□□□ 0.44
SYNPO-201ENST00000307662 GPRC5CQ9NQ84 441 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms