RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 CLCA2Q9UQC9 943 aa4.94□□□□□ -1.62
CD44-202ENST00000278385 CNPY2Q9Y2B0 182 aa4.94□□□□□ -1.62
CD44-202ENST00000278385 TMEM5Q9Y2B1 443 aa4.94□□□□□ -1.62
CD44-202ENST00000278385 ANKRD26Q9UPS8 1709 aa4.94□□□□□ -1.62
CD44-202ENST00000278385 MAP2P11137 1827 aaKnown RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 A0A1W2PPL8 197 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 CCDC154A6NI56 674 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 C2orf81A6NN90 581 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 MYO1FO00160 1098 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 GTPBP1O00178 669 aaKnown RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 HTRA2O43464 458 aaPredicted RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 KIF1CO43896 1103 aaKnown RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 FMO6PO60774 539 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 SOCS5O75159 536 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 ATP5BP06576 529 aaKnown RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 MMP10P09238 476 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 CSH1P0DML2 217 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 CSH2P0DML3 217 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 PCP11498 1178 aaKnown RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 CYP19A1P11511 503 aaPredicted RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 IFNAR1P17181 557 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 HLA-DPA1P20036 260 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 BTF3P20290 206 aaKnown RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 FGFR2P21802 821 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 ACSL1P33121 698 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 NNMTP40261 264 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 CCR9P51686 369 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 MAP2K6P52564 334 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 SLC5A3P53794 718 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 NFIXQ14938 502 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 CNGA2Q16280 664 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 SHROOM1Q2M3G4 852 aaPredicted RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 LCE3BQ5TA77 95 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 TIGD7Q6NT04 549 aaPredicted RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 ZNF790Q6PG37 636 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 IYDQ6PHW0 289 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 CXXC5Q7LFL8 322 aaKnown RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 OTOP2Q7RTS6 562 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 PKD1L3Q7Z443 1732 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 PPP1R42Q7Z4L9 355 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 FRMD5Q7Z6J6 570 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 SLFN11Q7Z7L1 901 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 ZER1Q7Z7L7 766 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 RTN4RL1Q86UN2 441 aaPredicted RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 ZNF761Q86XN6 746 aaPredicted RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 KRTAP19-1Q8IUB9 90 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 STPG3Q8N7X2 389 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 TXNDC5Q8NBS9 432 aaKnown RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 IPMKQ8NFU5 416 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 GABPB2Q8TAK5 448 aaPredicted RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 FBXO30Q8TB52 745 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 FEZF2Q8TBJ5 459 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 AUTS2Q8WXX7 1259 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 MAML1Q92585 1016 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 SYAP1Q96A49 352 aaPredicted RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 BICD1Q96G01 975 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 PHACTR3Q96KR7 559 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 TACO1Q9BSH4 297 aaKnown RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 SYNCQ9H7C4 482 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 ZMAT4Q9H898 229 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 RMI1Q9H9A7 625 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 EIF2B3Q9NR50 452 aaKnown RBP4.93□□□□□ -1.62
CD44-202ENST00000278385 TBCCD1Q9NVR7 557 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 GALNT8Q9NY28 637 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 RAPGEFL1Q9UHV5 662 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 TELO2Q9Y4R8 837 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 ASB1Q9Y576 335 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 RGPD2P0DJD1 1756 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 ZNF536O15090 1300 aa4.93□□□□□ -1.62
CD44-202ENST00000278385 DOT1LQ8TEK3 1739 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 SHANK3Q9BYB0 1731 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 KRTAP9-6A0A140TA67 174 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 PRAMEF22A3QJZ6 481 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 AGAP14A8MT82 685 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.92□□□□□ -1.62
CD44-202ENST00000278385 DDX39AO00148 427 aaKnown RBP4.92□□□□□ -1.62
CD44-202ENST00000278385 ACOT7O00154 380 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 DVL2O14641 736 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 CUTAO60888 179 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 GJB3O75712 270 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 TSPAN9O75954 239 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 BEST1O76090 585 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 ITGA5P08648 1049 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 CSF1P09603 554 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 MTHFD2P13995 350 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 ZNF28P17035 718 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 GAP43P17677 238 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 FGFR4P22455 802 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 AOAHP28039 575 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 CST5P28325 142 aaPredicted RBP4.92□□□□□ -1.62
CD44-202ENST00000278385 TM4SF1P30408 202 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 MLH1P40692 756 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 SEC24CP53992 1094 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 MRPS9P82933 396 aaKnown RBP4.92□□□□□ -1.62
CD44-202ENST00000278385 HTRA4P83105 476 aaPredicted RBP4.92□□□□□ -1.62
CD44-202ENST00000278385 ADCY2Q08462 1091 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 LRMPQ12912 555 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 CHAF1BQ13112 559 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 FGL2Q14314 439 aa4.92□□□□□ -1.62
CD44-202ENST00000278385 COG2Q14746 738 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms