RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 RSPH1Q8WYR4 309 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 BHMTQ93088 406 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 FUCA2Q9BTY2 467 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 KRCC1Q9NPI7 259 aaPredicted RBP13.95□□□□□ -0.18
SF3A1-201ENST00000215793 IL1RAPL1Q9NZN1 696 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 VPS28Q9UK41 221 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 PPP2R3BQ9Y5P8 575 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 A0A087WZ62 844 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 PLA2G6O60733 806 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 VTNP04004 478 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 VCLP18206 1134 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 LAMTOR4Q0VGL1 99 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 EFEMP1Q12805 493 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 CCDC92Q53HC0 331 aaPredicted RBP13.95□□□□□ -0.18
SF3A1-201ENST00000215793 GPR141Q7Z602 305 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 FAM83AQ86UY5 434 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 FBXO16Q8IX29 292 aaPredicted RBP13.95□□□□□ -0.18
SF3A1-201ENST00000215793 COLGALT1Q8NBJ5 622 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 FDXACB1Q9BRP7 624 aaPredicted RBP13.95□□□□□ -0.18
SF3A1-201ENST00000215793 ASB7Q9H672 318 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 EPS8L2Q9H6S3 715 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 NRXN1Q9ULB1 1477 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 H3BRB1 525 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 CYP2F1P24903 491 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 PTPN4P29074 926 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 RARRES1P49788 294 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 TKTL1P51854 596 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 CENPLQ8N0S6 344 aaPredicted RBP13.95□□□□□ -0.18
SF3A1-201ENST00000215793 ZNF606Q8WXB4 792 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 CASP10Q92851 521 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 APOL2Q9BQE5 337 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 TUT1Q9H6E5 874 aaKnown RBP13.95□□□□□ -0.18
SF3A1-201ENST00000215793 CYP4F12Q9HCS2 524 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 LNPEPQ9UIQ6 1025 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 VANGL2Q9ULK5 521 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 RAD23AP54725 363 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 MAP3K7CLP57077 242 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 TRMT5Q32P41 509 aaKnown RBP13.95□□□□□ -0.18
SF3A1-201ENST00000215793 ILDR2Q71H61 639 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 CDK5RAP1Q96SZ6 601 aaKnown RBP13.95□□□□□ -0.18
SF3A1-201ENST00000215793 TMEM120AQ9BXJ8 343 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 PRKD2Q9BZL6 878 aa13.95□□□□□ -0.18
SF3A1-201ENST00000215793 COPS7BQ9H9Q2 264 aaPredicted RBP13.95□□□□□ -0.18
SF3A1-201ENST00000215793 MGAT4DA6NG13 374 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 GLI1P08151 1106 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 CCR1P32246 355 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 GRK3P35626 688 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 CDH17Q12864 832 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 NFIL3Q16649 462 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 ERMARDQ5T6L9 678 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 MTDHQ86UE4 582 aaKnown RBP13.94□□□□□ -0.18
SF3A1-201ENST00000215793 CAMKK2Q96RR4 588 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 STN1Q9H668 368 aaKnown RBP13.94□□□□□ -0.18
SF3A1-201ENST00000215793 POLG2Q9UHN1 485 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.94□□□□□ -0.18
SF3A1-201ENST00000215793 DCDC2CA8MYV0 355 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 URODP06132 367 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 SERPINF2P08697 491 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 GYS1P13807 737 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.94□□□□□ -0.18
SF3A1-201ENST00000215793 MARC1Q5VT66 337 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 NIPA1Q7RTP0 329 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 KRT84Q9NSB2 600 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 RBM22Q9NW64 420 aaKnown RBP eCLIP13.94□□□□□ -0.18
SF3A1-201ENST00000215793 NAALADL1Q9UQQ1 740 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 DYRK1BQ9Y463 629 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 NCF1BA6NI72 391 aaPredicted RBP13.94□□□□□ -0.18
SF3A1-201ENST00000215793 TTLL13PA6NNM8 815 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 NCF1CA8MVU1 366 aaPredicted RBP13.94□□□□□ -0.18
SF3A1-201ENST00000215793 MPOP05164 745 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 CXCL8P10145 99 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 NCF1P14598 390 aaPredicted RBP13.94□□□□□ -0.18
SF3A1-201ENST00000215793 GP5P40197 560 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 TMED10P49755 219 aaKnown RBP13.94□□□□□ -0.18
SF3A1-201ENST00000215793 PRKAA2P54646 552 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 CSHL1Q14406 222 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 OLFML2BQ68BL8 750 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 ZPBP2Q6X784 338 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 VPS33AQ96AX1 596 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 ELOVL6Q9H5J4 265 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 RXFP1Q9HBX9 757 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 ADARB2Q9NS39 739 aaKnown RBP13.94□□□□□ -0.18
SF3A1-201ENST00000215793 NCOA3Q9Y6Q9 1424 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 ADGRA3Q8IWK6 1321 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 SALL1Q9NSC2 1324 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 RNASEH1O60930 286 aaKnown RBP13.94□□□□□ -0.18
SF3A1-201ENST00000215793 PRKAA1Q13131 559 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 ARRDC4Q8NCT1 418 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 KIAA0895Q8NCT3 520 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 OPTNQ96CV9 577 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 SEMA4AQ9H3S1 761 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 NT5MQ9NPB1 228 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 INTS13Q9NVM9 706 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 ZMYM2Q9UBW7 1377 aa13.94□□□□□ -0.18
SF3A1-201ENST00000215793 DDTLA6NHG4 134 aaPredicted RBP13.93□□□□□ -0.18
SF3A1-201ENST00000215793 UBDO15205 165 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 RAP1GAPP47736 663 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 CD151P48509 253 aa13.93□□□□□ -0.18
SF3A1-201ENST00000215793 KRR1Q13601 381 aaKnown RBP13.93□□□□□ -0.18
SF3A1-201ENST00000215793 RETSATQ6NUM9 610 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms