RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 BNIPLQ7Z465 357 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 TCEAL8Q8IYN2 117 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 SPATA4Q8NEY3 305 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 CMASQ8NFW8 434 aaPredicted RBP12.29□□□□□ -0.44
CLN6-223ENST00000637823 SPPL3Q8TCT6 385 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 TEKT4Q8WW24 435 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 MAIP1Q8WWC4 291 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 AUTS2Q8WXX7 1259 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 TBCBQ99426 244 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 NGRNQ9NPE2 291 aaKnown RBP12.29□□□□□ -0.44
CLN6-223ENST00000637823 EHD2Q9NZN4 543 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 PCSK1NQ9UHG2 260 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 NAALADL1Q9UQQ1 740 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 IRAK3Q9Y616 596 aa12.29□□□□□ -0.44
CLN6-223ENST00000637823 SLC38A8A6NNN8 435 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 GRXCR1A8MXD5 290 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 M0QYT0 321 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 FSCN2O14926 492 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 TEX28O15482 410 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 CTIFO43310 598 aaKnown RBP12.28□□□□□ -0.44
CLN6-223ENST00000637823 SOAT2O75908 522 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 F9P00740 461 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 KRT1P04264 644 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 IL1R2P27930 398 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 PTPN7P35236 360 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 GJC1P36383 396 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 ALDH1A3P47895 512 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 PSEN1P49768 467 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 SULT1E1P49888 294 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 HDAC4P56524 1084 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 IFRD2Q12894 506 aaPredicted RBP12.28□□□□□ -0.44
CLN6-223ENST00000637823 SMC1AQ14683 1233 aaKnown RBP12.28□□□□□ -0.44
CLN6-223ENST00000637823 TXNRD3NBQ6F5E7 133 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 SCYL2Q6P3W7 929 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 RSRC2Q7L4I2 434 aaKnown RBP12.28□□□□□ -0.44
CLN6-223ENST00000637823 SCD5Q86SK9 330 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 SLC13A5Q86YT5 568 aaPredicted RBP12.28□□□□□ -0.44
CLN6-223ENST00000637823 TNS4Q8IZW8 715 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 MMGT1Q8N4V1 131 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 LRRN4CLQ8ND94 238 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 PGAP3Q96FM1 320 aaPredicted RBP12.28□□□□□ -0.44
CLN6-223ENST00000637823 SLITRK1Q96PX8 696 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 C17orf80Q9BSJ5 609 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 EMILIN2Q9BXX0 1053 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 UBE2OQ9C0C9 1292 aaKnown RBP12.28□□□□□ -0.44
CLN6-223ENST00000637823 ZWILCHQ9H900 591 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 CYP4F11Q9HBI6 524 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 ALG13Q9NP73 1137 aaKnown RBP12.28□□□□□ -0.44
CLN6-223ENST00000637823 SMARCAL1Q9NZC9 954 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 DENND4CQ5VZ89 1909 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 CEP290O15078 2479 aa12.28□□□□□ -0.44
CLN6-223ENST00000637823 ANAPC1Q9H1A4 1944 aa12.27□□□□□ -0.44
CLN6-223ENST00000637823 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.27□□□□□ -0.45
CLN6-223ENST00000637823 A0A1W2PQH9 124 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 CCDC188H7C350 402 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 KRIT1O00522 736 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 PRRG1O14668 218 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 LPXNO60711 386 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 ADH1AP07327 375 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 CNPP09543 421 aaKnown RBP12.27□□□□□ -0.45
CLN6-223ENST00000637823 CSH1P0DML2 217 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 CSH2P0DML3 217 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 RARAP10276 462 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 MYOGP15173 224 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 ATF6P18850 670 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 TFE3P19532 575 aaPredicted RBP12.27□□□□□ -0.45
CLN6-223ENST00000637823 KDELR1P24390 212 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 GBP1P32455 592 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 CA8P35219 290 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 ERVFC1P60507 584 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 USP46P62068 366 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 DEUP1Q05D60 604 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 PDK2Q15119 407 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 PPP2R5EQ16537 467 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 RAB6CQ53S08 254 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 ERMARDQ5T6L9 678 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 FAM109BQ6ICB4 259 aaPredicted RBP12.27□□□□□ -0.45
CLN6-223ENST00000637823 AADACL2Q6P093 401 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 SPOCD1Q6ZMY3 1216 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 CYP4V2Q6ZWL3 525 aaPredicted RBP12.27□□□□□ -0.45
CLN6-223ENST00000637823 SND1Q7KZF4 910 aaKnown RBP eCLIP12.27□□□□□ -0.457e-7■□□□□ 8.6
CLN6-223ENST00000637823 PSTKQ8IV42 348 aaKnown RBP12.27□□□□□ -0.45
CLN6-223ENST00000637823 CCDC50Q8IVM0 306 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 MAP7D3Q8IWC1 876 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 MRPL43Q8N983 215 aaKnown RBP12.27□□□□□ -0.45
CLN6-223ENST00000637823 KCTD6Q8NC69 237 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 SLC7A14Q8TBB6 771 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 GPR152Q8TDT2 470 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 GIPC2Q8TF65 315 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 POF1BQ8WVV4 589 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 UBXN4Q92575 508 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 EDEM1Q92611 657 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 FBXO32Q969P5 355 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 RNF25Q96BH1 459 aaPredicted RBP12.27□□□□□ -0.45
CLN6-223ENST00000637823 KLHL5Q96PQ7 755 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 TGS1Q96RS0 853 aaKnown RBP12.27□□□□□ -0.45
CLN6-223ENST00000637823 PEBP4Q96S96 227 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 GDF15Q99988 308 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 TTLL2Q9BWV7 592 aa12.27□□□□□ -0.45
CLN6-223ENST00000637823 ADAM33Q9BZ11 813 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms