RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SDE2Q6IQ49 451 aa20.54■□□□□ 0.88
CLN3-262ENST00000637699 CHPFQ8IZ52 775 aa20.54■□□□□ 0.88
CLN3-262ENST00000637699 SMARCD1Q96GM5 515 aa20.54■□□□□ 0.88
CLN3-262ENST00000637699 CUEDC2Q9H467 287 aa20.54■□□□□ 0.88
CLN3-262ENST00000637699 KRT82Q9NSB4 513 aa20.54■□□□□ 0.88
CLN3-262ENST00000637699 CYP8B1Q9UNU6 501 aa20.54■□□□□ 0.88
CLN3-262ENST00000637699 NEDD8-MDP1E9PL57 170 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 TLR5O60602 858 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 CASP1P29466 404 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 NASPP49321 788 aaPredicted RBP20.53■□□□□ 0.88
CLN3-262ENST00000637699 SNRPFP62306 86 aaKnown RBP20.53■□□□□ 0.88
CLN3-262ENST00000637699 ZNF699Q32M78 642 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 RABEPKQ7Z6M1 372 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 ACOT1Q86TX2 421 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 SLC41A1Q8IVJ1 513 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 FUKQ8N0W3 1084 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 CHCHD4Q8N4Q1 142 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 TRIML1Q8N9V2 468 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 LINC00301Q8NCQ3 95 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 IPO4Q8TEX9 1081 aaKnown RBP20.53■□□□□ 0.88
CLN3-262ENST00000637699 TNIP3Q96KP6 325 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 HSPA12BQ96MM6 686 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 DUSP9Q99956 384 aaKnown RBP20.53■□□□□ 0.88
CLN3-262ENST00000637699 BBS2Q9BXC9 721 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 SDCBP2Q9H190 292 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 COMMD8Q9NX08 183 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 STARD13Q9Y3M8 1113 aa20.53■□□□□ 0.88
CLN3-262ENST00000637699 FAM92AA1XBS5 289 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 ARHGAP33O14559 1287 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 EXOC3O60645 756 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 ZNF217O75362 1048 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 BEST1O76090 585 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 TBX18O95935 607 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 CCDC130P13994 396 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 NDUFV2P19404 249 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 RDXP35241 583 aaKnown RBP20.52■□□□□ 0.88
CLN3-262ENST00000637699 ORC1Q13415 861 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 ZNF667Q5HYK9 610 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 TPGS1Q6ZTW0 290 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 HTR3DQ70Z44 454 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 IQUBQ8NA54 791 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 PLEKHO2Q8TD55 490 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 XPO6Q96QU8 1125 aaKnown RBP20.52■□□□□ 0.88
CLN3-262ENST00000637699 SMOQ99835 787 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 C7orf25Q9BPX7 421 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 SLC6A17Q9H1V8 727 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 ZSCAN16Q9H4T2 348 aaPredicted RBP20.52■□□□□ 0.88
CLN3-262ENST00000637699 FOXD4L1Q9NU39 408 aa20.52■□□□□ 0.88
CLN3-262ENST00000637699 TFIP11Q9UBB9 837 aaKnown RBP20.52■□□□□ 0.88
CLN3-262ENST00000637699 UBE4BO95155 1302 aa20.52■□□□□ 0.87
CLN3-262ENST00000637699 PRRT4C9JH25 899 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 H0Y626 953 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 SPTLC2O15270 562 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 TRIM16O95361 564 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 CD59P13987 128 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 TYRP14679 529 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 MAP3K7CLP57077 242 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 RING1Q06587 406 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 NCOA4Q13772 614 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 CNNM4Q6P4Q7 775 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 TOGARAM2Q6ZUX3 1019 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 RGL4Q8IZJ4 473 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 ZMIZ2Q8NF64 920 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 KLF16Q9BXK1 252 aaPredicted RBP20.51■□□□□ 0.87
CLN3-262ENST00000637699 BLZF1Q9H2G9 400 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 VRTNQ9H8Y1 702 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 CD248Q9HCU0 757 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 SLC39A2Q9NP94 309 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 CD93Q9NPY3 652 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 TLR8Q9NR97 1041 aaKnown RBP20.51■□□□□ 0.87
CLN3-262ENST00000637699 LHX6Q9UPM6 363 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 RAD54BQ9Y620 910 aa20.51■□□□□ 0.87
CLN3-262ENST00000637699 PCDH15Q96QU1 1955 aa20.5■□□□□ 0.87
CLN3-262ENST00000637699 NBEAQ8NFP9 2946 aa20.5■□□□□ 0.87
CLN3-262ENST00000637699 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.5■□□□□ 0.87
CLN3-262ENST00000637699 GREM1O60565 184 aa20.5■□□□□ 0.87
CLN3-262ENST00000637699 NDUFS2O75306 463 aa20.5■□□□□ 0.87
CLN3-262ENST00000637699 SYPP08247 313 aa20.5■□□□□ 0.87
CLN3-262ENST00000637699 PLEKHG6Q3KR16 790 aa20.5■□□□□ 0.87
CLN3-262ENST00000637699 LRSAM1Q6UWE0 723 aa20.5■□□□□ 0.87
CLN3-262ENST00000637699 UNC13DQ70J99 1090 aa20.5■□□□□ 0.87
CLN3-262ENST00000637699 SLC2A14Q8TDB8 520 aa20.5■□□□□ 0.87
CLN3-262ENST00000637699 CAMK1GQ96NX5 476 aa20.5■□□□□ 0.87
CLN3-262ENST00000637699 FBXO44Q9H4M3 255 aa20.5■□□□□ 0.87
CLN3-262ENST00000637699 CACNA2D2Q9NY47 1150 aa20.5■□□□□ 0.87
CLN3-262ENST00000637699 WDR35Q9P2L0 1181 aa20.5■□□□□ 0.87
CLN3-262ENST00000637699 FREM2Q5SZK8 3169 aa20.5■□□□□ 0.87
CLN3-262ENST00000637699 A0A1W2PQD8 194 aa20.49■□□□□ 0.87
CLN3-262ENST00000637699 LRRIQ3A6PVS8 624 aaPredicted RBP20.49■□□□□ 0.87
CLN3-262ENST00000637699 CACNG3O60359 315 aa20.49■□□□□ 0.87
CLN3-262ENST00000637699 ATP5C1P36542 298 aaKnown RBP20.49■□□□□ 0.87
CLN3-262ENST00000637699 EHHADHQ08426 723 aa20.49■□□□□ 0.87
CLN3-262ENST00000637699 KNOP1Q1ED39 458 aaKnown RBP20.49■□□□□ 0.87
CLN3-262ENST00000637699 SHC4Q6S5L8 630 aa20.49■□□□□ 0.87
CLN3-262ENST00000637699 C12orf56Q8IXR9 622 aa20.49■□□□□ 0.87
CLN3-262ENST00000637699 C12orf29Q8N999 325 aa20.49■□□□□ 0.87
CLN3-262ENST00000637699 PARD3BQ8TEW8 1205 aa20.49■□□□□ 0.87
CLN3-262ENST00000637699 BHMTQ93088 406 aa20.49■□□□□ 0.87
CLN3-262ENST00000637699 JAKMIP2Q96AA8 810 aa20.49■□□□□ 0.87
CLN3-262ENST00000637699 GABRG3Q99928 467 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms